1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctcttgcaatatctttttctttaaatcgagagagatcctagtttgtttaaagagtgaattgactctcgcatgtttactttgatatgtggctttgcag
species | Arabidopsis thaliana |
transcript | AT2G42240.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTEST: gi|116391480|gb|EG434072.1|EG434072
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTEST: gi|116391488|gb|EG434080.1|EG434080
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTEST: gi|116391485|gb|EG434077.1|EG434077
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCEST: gi|116391481|gb|EG434073.1|EG434073
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGC
EST: TGAAGATTCAAGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTEST: gi|116391487|gb|EG434079.1|EG434079
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTEST: gi|116391479|gb|EG434071.1|EG434071
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTEST: gi|116391419|gb|EG434011.1|EG434011
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTEST: gi|116391483|gb|EG434075.1|EG434075
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTT
EST: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG GACGTCAGTTG
genomic: TGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctct ... ggctttgcagGACGTCAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAGgtacagctcttgcaatatctttttctttaaatcgagagagatcctagtttgtttaaagagtgaattgactctcgcatgtttactttgatatgtggctttgcag
- - - - - - - - - - TGAAGA