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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtagtaggattctttcggttcggtagctcaataaaaatttgacctttgctattgttgtgttaatttttattttgtgatttttgtgatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG

Basic information

species Arabidopsis thaliana
transcript AT2G42240.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391480|gb|EG434072.1|EG434072
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|116391488|gb|EG434080.1|EG434080
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|116391485|gb|EG434077.1|EG434077
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|116391481|gb|EG434073.1|EG434073
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|116391487|gb|EG434079.1|EG434079
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|125089756|gb|EL148005.1|EL148005
EST:     CCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: CCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|116391483|gb|EG434075.1|EG434075
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
EST: gi|19876319|gb|AU237150.1|AU237150
EST:     TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG                         ATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG
genomic: TCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAGgcaagtagta ... gatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacctttgctattgttgtgttaatttttattttgtgatttttgtgatatggtagATGATGGTTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG
                  tgttaat  putative branch site (score: 3)
                    ttaatttttattttgt  TA-rich tract