1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttggtttaagatttcacacttgggctttaagtgccgtcaacatggtttcacgtttctgaaaactcacactgcacattcttgcacgtttgggcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG
species | Arabidopsis thaliana |
transcript | AT2G42240.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|116391488|gb|EG434080.1|EG434080
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|116391485|gb|EG434077.1|EG434077
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|116391481|gb|EG434073.1|EG434073
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|116391487|gb|EG434079.1|EG434079
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAGCACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|125089756|gb|EL148005.1|EL148005
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTAG GTTTTGGCAGCTTTCAAACTCCTGGAATGEST: gi|116391483|gb|EG434075.1|EG434075
genomic: TGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCT-Ggtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATG
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAAEST: gi|19876319|gb|AU237150.1|AU237150
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
EST: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTG GTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
genomic: TTGGGAAAGCTTGAAAAAACTCAAGTCTTGGAACACTACTACTGAATCTGgtaagatcat ... gcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAA
tttcacgtttctgaaaactcacactgcacattcttgcacgtttgggcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG
aactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtttaagatttcacacttgggctttaagtgccgtcaacatggtttcacgtttctgaaaactcacactgcacattcttgcacgtttgggcactagcagGTTTTGGCAGCTTTCAAACTCCTGGAATGAGTAGTTCTGCTTACAACACAATTGGTTATTCACCTGCACAAAG
- - - - - - ttcacac
- - - - - - - - - - - - - - - - - - tcaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtttgg