1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattgaaatcattcggttgggatttgtatgcgtaagtgaataagctttgtcatttgcctagattaagaaactttctgaattttatttctgaacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG
species | Arabidopsis thaliana |
transcript | AT2G42240.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|116391488|gb|EG434080.1|EG434080
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|116391485|gb|EG434077.1|EG434077
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|164063177|gb|ES153160.1|ES153160
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: GCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|116391481|gb|EG434073.1|EG434073
genomic: GCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|116391487|gb|EG434079.1|EG434079
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|116391483|gb|EG434075.1|EG434075
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCEST: gi|19876319|gb|AU237150.1|AU237150
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
EST: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAAT GGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
genomic: CTGTGTTCTCGGATCTGCAATCAGCTGTAGCGGTGATGCATGCTCTCAATgtgagtacaa ... aacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCC
tttgtcatttgcctagattaagaaactttctgaattttatttctgaacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG
cctttc CT-rich tract
tttctgaattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgaaatcattcggttgggatttgtatgcgtaagtgaataagctttgtcatttgcctagattaagaaactttctgaattttatttctgaacctttcagGGAATGGTGTTTGATCTTGAAAAGCATTCTACTCTTCACATTGACCTTGCCAAATCAAATCCCAAATCTAAGCGTTCAAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - gaaatca
- - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - -gaataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctg