1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTGGCTTCAAGATGTTTACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGgtatatgagtaaatgaatcgatgatgataaactagcagtaaaaacatcaataagagtctcatctgactcggtctatgcgcag
species | Arabidopsis thaliana |
transcript | AT2G39630.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAACGTCCATCTGAAAAG GTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCEST: gi|86076734|gb|DR372491.1|DR372491
genomic: AAACGTCCATCTGAAAAGgtatatgagt ... ctatgcgcagGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACC
EST: TTTACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAG GTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACC
genomic: TTTACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGgtatatgagt ... ctatgcgcagGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGCTTCAAGATGTTTACTAGGGCTGCTGCTAGGAGACTTTTCACAAACGTCCATCTGAAAAGgtatatgagtaaatgaatcgatgatgataaactagcagtaaaaacatcaataagagtctcatctgactcggtctatgcgcag
- - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - AGGAGA