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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatagactgcccactcatgctaaatttctcaataagtcgttattgtgttccttaaaccctatatgcatcagtggattaagtttaccttttctccttttagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG

Basic information

species Arabidopsis thaliana
transcript AT2G39630.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39630.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G10150.1 (Glycine max), 3'ss of exon 5
---tatagactgcccactca-tgctaaatttctcaataagtc-gttattgtgttccttaaaccctatatgcatcagtggattaagtttaccttttctccttttagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG
   | |   |  |  |||   | | ||||   |   ||| || |    |    | || | |  || |   ||   |  | || ||        || |  ||  |||| || ||| ||||||||||||||| |||||  |||||||||||||||||||| ||  | || || |||||| | |||||  ||||||| || |  || |
ctctttgctcaacttactttcttccaaatgcatttgtaactctgcggatacacttct-acattctcttcacaatggacgcttgagcagg----ttgtaattgcagGTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAG

upper sequence: AT2G39630.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G52810.1 (Glycine max), 3'ss of exon 5
tatagactgcccactcatgctaaatttctcaataagtcgttattgtgttccttaaaccctat--atgcatcagtggattaagtttaccttttctccttt--tagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG-
 |||       | ||  |||| || ||   | |  ||    | ||  ||  | |    || |  || ||    |  |||   || ||  |     |||    |||| || ||| ||||||||||||||| |||||  |||||||||||||||||||| ||  | || || |||||| | |||||  ||||||| || |  || | 
-atatttgaatctctt-tgctcaactt---actttgttccaaatgcatttgtaactttctgtggatacacttctacattctcttcacaatggacacttgagcaggTTGTAATTATTGATGATGGAAGTGCTGATGAGACAAAAAGAGTAGCTTTTGAATTTGTGAGGAAATACACAGTAGACAAGGTAAGGGTCATCCTTCTAGG

upper sequence: AT2G39630.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv13s0019g01230.t01 (Vitis vinifera), 3'ss of exon 5
------tatagactgcccactcatgctaaatttctcaataag--tcgttattgtgttccttaaaccctatatgcatcagtggattaagtttaccttttctccttttagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG
       ||   |||   |||    | ||||  |   ||  |  |  |  | |  |||  ||   |    |   || | |||   | || | | | | |       ||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||| ||  | | ||| |||||||| |||||  | ||||||||||  ||||
ttacaggatgtcctgattactatctccaaatagcaacatgggctttatcctagcattctctacttctctcacatat-actggggcatgtgttcttgtac-------agGTGGTGATTGTCGATGATGGAAGTGCTGATGGGACAAACAGAGTAGCTTTTGACTTTGTAAAAAAATACACAATAGACAATGTTAGGGTTATACTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttccttaaaccctatatgcatcagtggattaagtttaccttttctccttttagGTGGTGATTGTTGATGATGGAAGTGTTGATGGAACAAAAAGAGTAGCTTTTGATTTCATTAGAAAGTACACAATTGACAACATAAGGGTTATACCCCTTG
                                   tttaccttttctcctt  CT-rich tract
                             attaagttta  TA-rich tract