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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagacaacttccacttattcgaatctcccttttactggattgtgtgtctgcttccaatcgtgagaagtttgcttctcttgcgaaacagcagcacaagtcttatttatgcatactacagaggcataattgtaattcgcctctggtttgcagTTACCTTCAAGATCGTGCATCACGGGACAAGAGTTTTTCTTTTGAG

Basic information

species Arabidopsis thaliana
transcript AT2G39630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125163245|gb|EL190015.1|EL190015
EST:     GCGTATAATGAAGAACTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGA                         TTACCTTCGAGATCG
genomic: GCGTATAATGAAGAACTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGAgtaagttaga ... tggtttgcagTTACCTTCAAGATCG
EST: gi|124772642|gb|EH862771.1|EH862771
EST:     GCGTATAATGAAGAACTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGA                         TTACCTTCAAGATCGTGCATCACGG
genomic: GCGTATAATGAAGAACTGAGACTTCCTGCTGCTCTTGAGGAAACAATGGAgtaagttaga ... tggtttgcagTTACCTTCAAGATCGTGCATCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttatttatgcatactacagaggcataattgtaattcgcctctggtttgcagTTACCTTCAAGATCGTGCATCACGGGACAAGAGTTTTTCTTTTGAG
                                     ttcgcctct  CT-rich tract
                           ataattgtaatt  TA-rich tract