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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcccttagttttgactgttaaaacttcagagaaactagaaattgtgctataaatttcctgatctcctagcctctcagATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGATATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTC

Basic information

species Arabidopsis thaliana
transcript AT2G39630.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076734|gb|DR372491.1|DR372491
EST:     ATGCTGATGGAGCAACTAAAGTAACGGACCTAGRMAAACTTGAAAATCAG                         ATCAATGCAGTAGCCAGAGMAGAATATTCAATCAGAAATCCAGCATCTAAG
genomic: ATGCTGATGGAGCAACTAAAGTAACGGACCTAGAAAAACTTGAAAATCAGgtttgccctt ... agcctctcagATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcagagaaactagaaattgtgctataaatttcctgatctcctagcctctcagATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGATATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTC
                                 tcctgat  putative branch site (score: 3)
                                       tctcctagcctctc  CT-rich tract
                         tataaattt  TA-rich tract