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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGTAGCCAACCCTGTGGAACTATCCGGAAAAGGAAGACCACGAGTTTTCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCCgtaagtactgtataataatacattgtgttctctaagctttttgaacggttattttcggtttgttttaagattggcattgcgttttcttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G39570.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124962392|gb|EL036818.1|EL036818
EST:     GTTGAAATCACTAGGAATCTGCATCTTCTCC                         GCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATAGA
genomic: GTTGAAATCACTAGGAATCTGCATCTTCTCCgtaagtactg ... tttcttgtagGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATAGA
EST: gi|124931723|gb|EL009054.1|EL009054
EST:     CTACGATGTCACACTTGCGTTGTAAATCACTAGGAATCTGCATCTTCTCC                         GCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAG
genomic: CTACGATGTCACACTTGCGTTG-AAATCACTAGGAATCTGCATCTTCTCCgtaagtactg ... tttcttgtagGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAG
EST: gi|164071356|gb|ES092682.1|ES092682
EST:     TCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCC                         GCTGAGATTGGGAGACATTCGACTTTAGA
genomic: TCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCCgtaagtactg ... tttcttgtagGCTGAGATTGGGAGACATTCGACTTTAGA
EST: gi|116420380|gb|EG462972.1|EG462972
EST:     TCTACGATGTCACACTTGCGCTGAAATCACTAGGAATCTGCATCTTCTCC                         GCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATAGA
genomic: TCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCCgtaagtactg ... tttcttgtagGCTGAGATTGGGAGACATTCGACTTTAGATCGACAATGGGAAGTTTATAGA
EST: gi|124990132|gb|EL062401.1|EL062401
EST:     TCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCC                         GCTGAGATTGGGAGA
genomic: TCTACGATGTCACACTTGCGTTGAAATCACTAGGAATCTGCATCTTCTCCgtaagtactg ... tttcttgtagGCTGAGATTGGGAGA