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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGCTCTTTCTACTTCTGCCTTCAATCCAATGTCTCTAAGCCTCCTTCCCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaaagttattgtcttttgtcttgtgcttggtgttttctttatatggttgattaaaagtttgtgtttttttggtgattcgtag

Basic information

species Arabidopsis thaliana
transcript AT2G39570.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164048818|gb|ES069154.1|ES069154
EST:     CCGTGATAGGAAAGGATTGCTTCATG                         ATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG
genomic: CCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaa ... tgattcgtagATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG
EST: gi|124913176|gb|EH987050.1|EH987050
EST:     CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATG                         ATGTTACTAAAGTTTTGA
genomic: CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaa ... tgattcgtagATGTTACTAAAGTTTTGA
EST: gi|125299519|gb|EL313604.1|EL313604
EST:     CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATG                         ATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG
genomic: CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaa ... tgattcgtagATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG
EST: gi|125075747|gb|EL139173.1|EL139173
EST:     GCCGTGATAGGAAAGGATTGCTTCATG                         ATGTTTACTAAAGTTTTGTACAGAGCTAGAGTTTACAATACAAAGAGTCAA
genomic: GCCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaa ... tgattcgtagATG-TTACTAAAGTTTTG-ACAGAGCTAGAGTTTACAATACAAAGAGTCAA
EST: gi|301502493|gb|HO208033.1|HO208033
EST:     CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATG                         ATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG
genomic: CCTTTATCTTCTCAAGTTCTTTTGCCGTGATAGGAAAGGATTGCTTCATGgtatgtgtaa ... tgattcgtagATGTTACTAAAGTTTTGACAGAGCTAGAGTTTACAATACAAAGAGTCAAAG