Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttaaaactgatctctctaacattaagagaacctaaccttacctctgctaagagaagttgggacttctatggttgaaagatttgtataactcaagtagttcttgtttctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAGTTGTTTGTTAGAGGCACAGACGGGAATAAAATAATGGACCCAAAACATC

Basic information

species Arabidopsis thaliana
transcript AT2G39570.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124984356|gb|EL057018.1|EL057018
EST:     AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
EST: gi|124826422|gb|EH911288.1|EH911288
EST:     ATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: ATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
EST: gi|125020489|gb|EL092758.1|EL092758
EST:     CTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: CTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
EST: gi|125245818|gb|EL259903.1|EL259903
EST:     GGGACTTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: GGGAC-TTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
EST: gi|124824335|gb|EH909201.1|EH909201
EST:     TCAGGACTTCCAAAGACTGCGATGTCCTAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGA
genomic: TCAGGACTTCCAAAGACTGCGATGTCC-ACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGA
EST: gi|116420380|gb|EG462972.1|EG462972
EST:     AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
EST: gi|125070790|gb|EL136072.1|EL136072
EST:     AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTA
genomic: AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTA
EST: gi|124941034|gb|EL017429.1|EL017429
EST:     AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCAC                         ATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG
genomic: AGGGACTTTTCTATGATATCCTCAGGACTTCCAAAGACTGCGATGTCCACgtacgttaaa ... ctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctatggttgaaagatttgtataactcaagtagttcttgtttctttatccagATTGCATACGGTAGGTTCTCCTCCAAGGTTAAAGGTTATAGGAATTTGGAGTTGTTTGTTAGAGGCACAGACGGGAATAAAATAATGGACCCAAAACATC
                     gtataac  putative branch site (score: 3)
                                    ttcttgtttctttatc  putative PPT
             aaagatttgtataa  TA-rich tract