1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttttcttcttctttctaattctgatgtttcatttgagagaagaaccaacattaacgttgtggtttgtgactttgtgtaacagGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGCTTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGG
species | Arabidopsis thaliana |
transcript | AT2G39570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAAT GGATCTATTGCACACGAAACAGAGAEST: gi|301502493|gb|HO208033.1|HO208033
genomic: ACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAATgtgagttttc ... tgtgtaacagGGATCTATTGCACACGAAACAGAGA
EST: ACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAAT GGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGTCCATCTAAC
genomic: ACAACACCAGATGGAAGAGTTTTGGATATGTTTTTCATCACTGACGCAATgtgagttttc ... tgtgtaacagGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAAC
ttcatttgagagaagaaccaacattaacgttgtggtttgtgactttgtgtaacagGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGCTTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGG
cattaac putative branch site (score: 2)
aacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttcttctttctaattctgatgtttcatttgagagaagaaccaacattaacgttgtggtttgtgactttgtgtaacagGGATCTATTGCACACGAAACAGAGACAAACCAAAACGTGTGACCATCTAACGGCTGTGCTTGGTGAGCATGGTGTGAGTTGTGAGCTTGAACTAGCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT