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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag

Basic information

species Arabidopsis thaliana
transcript AT2G39460.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag
| || |||||||||||| ||   ||||||||||||||||| |||| |||||| ||||||||||| ||||||||| | |||||||||||||| || |||||||    ||     |   ||  ||       || | |   ||||   || ||  | | || || ||         |  || | || |||
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgt----tagcactttccttcatacttcattttatcgcttgatttgctaggt--agtgtagttaactg---accctacttgtcttccag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaat-atatttgacactatggtttggttttgttacag
|||| ||||| || ||| |    || |||||||||||||| ||||  ||||| ||||||||||||||||||||| | |||||||| ||||| || |||||||  || |   |   |  ||   | | | ||   |  |   || ||| |||    | | |  |     ||| | ||   | |  |||||
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaactcaccttcctttgttcatggctgaatacgc--ttcattctgtatgttgacaacttggtgtatcgattttctgtaatacag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgt----actttaaagagtatttttctatgaagccttgtt-gtgagattgattatgttcaatatatttgacactatggtttggttttgttacag
|||| |||||||| ||| |    || |||||||||||||| |||| |||||| ||||||||||||||||| ||| ||||||| || ||||| || |||||||    | ||     ||| || || | |   || |  ||  | |  |||   |  |   |  ||||    | | ||  |  ||  |||  |||
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtct--gtcctgtc-cag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtt-tggttttgttacag
| || |||||||||||| |    || |||||||||||||| |||| ||| || ||||||||||||||||||||| | ||||| || |||||  | |||||||    ||     |       | | |    ||  ||   |||| ||||||||    |  |       |||  || | || |   | |||
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgt----tagcacttgccccagtgtaattttttcctgcacgatttattatgttgtgcaactaaagagttattcttatcgtgtctgtgcag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G52310.1 (Glycine max), 5'ss of exon 3
-TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactt----taaagagtattttt----ctatgaagccttgttgtgagattgattatgttcaat-atattt-gacactatggtttggttttgttacag--
 | ||||| ||||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||| | ||||||||||| ||  | |||||||| |     | || | | | |||    ||   |    |  || ||| |||| | ||   |||  | || | || |    ||     ||   |  |    
CTGGTTTTTATTGTTGACCTCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCGAAGAAAGTGAATACTTTAATCAggtaatggaaatgaaaaatgtatttagatctgctacatgtaattttga-attgttgataaacaaccaaatgtagagaaagaggaccaattgcttagcttac

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G15230.2 (Glycine max), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtac-------tttaaagagtatttttctatga-agccttgttgtgagattg-attat-gttcaatatatttgaca--ctatggtttggttttgttacag
| ||||||||||| ||| | ||||| |||||||||||||| |||||||| || ||||| ||||||||||||||| |||||||||| |||||  | |||||||         ||||| || ||||    | ||| ||   || | | | | || ||||| | | |  | ||||||       | ||    |    || |||
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGgtgagcaactatttaatgactattcagttttgatagtaatggtttcataatgcattattgctgatgaaatttgatgggtggtagtgaattccgttttcag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G07160.2 (Glycine max), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta---ctttaaagagtattttt--ctatga-agccttgttgtgagattg-attat-gttcaatatatttgacactatggtttggttttgttacag----
| ||||||||||| ||| | ||||| |||||||||||||| |||||||| || ||||| ||||||||||||||| |||| |||||||||||  | |||||||     | ||   | |  ||     | ||| ||   || | | | |||| ||||| | | |  | |||||    |  |   || |||   ||       
TGGTTTTCATTGTCGACCTGCGTGCCGACAAGAAGAAGATCAAGGATGCGGTGAAGAAAATGTATGACATCCAGGCCAAAAAAGTGAACACCTTGATCAGgtgagcatctatgcaatgattgcagttttgatagtaatgatttcatattgcattattgctgatgaaatttgttgattggtagtgatttccgtattcactt

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaaga-----gtatttttctatgaagccttgttgtgagattgatt---atgttcaatatattt-----gacactatggtttggttttgttacag
| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||| ||||||||||||||||| ||| | |||||||| || ||| | |||||||| |  |||       | ||||   | ||   | |   | |  ||||  ||   |     || | || |      | |  |    ||||||   ||||| 
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca-

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G04670.2 (Glycine max), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta---ctttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggt--ttggttttgttacag---------
| |||||||| || ||| | || ||||||||||||||||| |||||||| || |||||||||||||| || |||||||||||||| |||||  | |||||||    |||||   |||  |  | |  |||   |||||    ||||  ||||    |||     ||  |   | |   |   |||| |||| |         
TGGTTTTCATAGTCGACTTGCGGGCTGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTAAACACCTTAATCAGgtgagtctttatgtagtgatgcttttagaa--tttgtttgatgattttttattgctaatgacaatggtatgcttgcagtgaattttattactgagacataca

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G40780.2 (Glycine max), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta---ctttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag------------
| ||||||||||||||| | || || |||||||||||||| |||||||| || |||||||||||||| || ||| |||||||||| |||||  | |||||||    ||||| | |||  |  | |||  |   |  ||||  |||| ||||| | | || |  |    || ||||| || ||    |  |             
TGGTTTTCATTGTTGACTTGCGGGCCGACAAGAAGAAGATCAAGGATGCAGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGgtgagcctttataaagtgatgct-tatagaatttgtttgtt-gattcattat-tgctattttctaatgacaatggtatgcttgcagtgaatttgatattgcag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaa------gccttgttgtgagattgattatgttcaatatat-ttgacactatggtttggttttgttacag------
| ||||||||||||||||| |||||||||||||| ||||| || ||||| || ||||||||||| || || |||||||||||||| |||||  | |||||||| |||  |     |   ||  | ||      || ||||| |  | | |   | |   |||   | || |||| | || | | |  | | | ||      
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgtaatttccattaattcactcacttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgat-taaaagaaataa

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacact-----atggt-ttggttttgttacag--------
| |||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || || ||||||||  | ||    | | || | || |    || |  |     ||| |||     |  |||| || | |     | | | |  |  || | | ||        
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgta--tcaatatttttattccaattatattttttattatccctgagtatacagcagttattggatagtcgataaagatatcagacttttcaaagttagattc

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta----ctttaaagagtatttttctatgaagccttgttgtgag-attga----ttatgttcaat----atatttgacactatggtttggttttgttacag
|||| |||||||||||||| ||||||||||| |||||||| ||||||||  | ||||| ||||||||||| ||||||||||||||||| ||  | ||||||||    ||| |    | || ||   | | ||     |||  |  ||||     || | |||| |    | | || | |  ||  |    |||||||    
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaaagacttcattttgaatcttctca-gcagttcaattgaaattattggcatttttttttcagttgcaacaattcatatgattatcattttttgttggca

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 5'ss of exon 1
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta------ctttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag------
| |||||||| || ||  | || || |||||||||||||| || || || || ||||||||||| ||||| ||||||||||| || || ||  | |||||||        |||     |  || ||    |  ||     | |  | ||    |   |   | | |   |     | || | || | | | |||      
TGGTTTTCATCGTGGATGTGCGCGCCGACAAGAAGAAGATCAAAGAGGCCGTCAAGAAGATGTACGACATTCAGACCAAGAAGGTCAATACTTTGATCAGgtgattatgttttcccatgctttatttctcggggcaacactctagggtttgggaaactgggtttttgcaattgcgtcgtgttgtgtagctccagattttc

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 5'ss of exon 1
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta---------ctttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag------
| || ||||| || ||| | ||||| |||||||||||||| ||| | ||||| ||||| ||||| ||||||||||||||||| || |||||| | |||||||          || |     |   ||| ||  ||||   ||   |  | ||    |  |    | |  |||  | || |    |    |||| |||      
TGGTGTTCATCGTGGACGTGCGTGCGGACAAGAAGAAGATCAAGCAGGCTGTGAAGAAAATGTACGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtgattgtcctcctctctgttgggatttccttcgaag---tgccttagggttttcgaactgttgtctccttgtaattacgtcgggtgcctgtttcagtcccgg

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactt-taaagagtatttttctatgaagccttgttgtgagattga-ttatg---ttcaatatatttgacacta---tggtttggttttgttacag----
| ||||||||||||||  | || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||| | ||||||||||  | |       |||  | | | | | |   ||| | | |  ||| |   |||| | | || |  | |    || | || | ||   |||     
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactcattatcccccctttgttgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S46_72V6.1 (Physcomitrella patens), 5'ss of exon 1
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtt-tggttttgttacag-----------
| || |||||||| ||| | || ||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || |||||||| || |||||| | |||||||  ||       |  | | |  |    |||| ||    || | |   | |      | ||||   ||  |||  |||| | |||   |           
TGGTCTTCATTGTGGACGTGCGCGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAAATGTACGACATTCAAACCAAGAAGGTCAACACATTGATCAGgtctttgtttctctcctctcccctttttccttttttaatgaatcagggtttgttgattttttgtttcttcggtggtggtctcgtttgcgcaaattgcgtg

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ09823 (Selaginella moellendorffii), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta--ctttaaagagtatttttct--atga-agccttgt-tgtgagattgattatgttcaatatatttga---cactatggtttggttttgttacag-----------------------------------------------------------------------
| || ||||| || ||||| || || |||||||||||||| ||| | || || |||| |||||| || |||||||||||||| |||||||| || ||||||||  ||||      |  ||| ||   ||  || || || |||    | ||||   |||    | | ||     || ||   ||||||   ||                                                                           
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctagtgtgtcttttcgattcacttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgtttttttttccag

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ15194 (Selaginella moellendorffii), 5'ss of exon 2
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgta--ctttaaagagtatttttct--atga-agccttgtt-gtgagattgattatgttcaatatatttgacactatggttt---ggttttgttacag---------------------------------------------------------------------
| || ||||| || ||||| || || |||||||||||||| ||| | || || |||| |||||| || |||||||||||||| |||||||| || ||||||||  ||||      |  ||| ||   ||  || || ||| ||    |  |||   |||    | | ||    ||  ||||   |||| | ||                                                                         
TGGTCTTCATCGTCGACATCCGGGCCGACAAGAAGAAGATCAAGAACGCCGTGAAGATGATGTACGATATCCAGACCAAGAAGGTGAACACGCTGATCAGgtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828686|gb|CK118370.1|CK118370
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47831112|gb|CK120796.1|CK120796
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|125298764|gb|EL312849.1|EL312849
EST:     GAACACACTCATCAG                         GCCTGATGGAACCTAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATG
genomic: GAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACC-AAGAAGGCTTACGTGAGGCTTACACCAGACTATGATG
EST: gi|164033201|gb|ES111493.1|ES111493
EST:     CATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|163988999|gb|ES040254.1|ES040254
EST:     GAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGG
genomic: GAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGG
EST: gi|86077798|gb|DR373555.1|DR373555
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124774941|gb|EH865070.1|EH865070
EST:     AGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTA
genomic: AGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTA
EST: gi|164089324|gb|EL981220.1|EL981220
EST:     CAAGAAAGTGAACNCACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124956210|gb|EL031158.1|EL031158
EST:     ACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: ACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47828593|gb|CK118277.1|CK118277
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|125017478|gb|EL089747.1|EL089747
EST:     AAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTAC
genomic: AAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTAC
EST: gi|164226645|gb|ES070159.1|ES070159
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGAC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGAC
EST: gi|164053832|gb|EL968549.1|EL968549
EST:     CAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124951728|gb|EL027068.1|EL027068
EST:     CAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGA
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGA
EST: gi|86081160|gb|DR376917.1|DR376917
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47828679|gb|CK118363.1|CK118363
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124765768|gb|EH855898.1|EH855898
EST:     GTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTA
genomic: GTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTA
EST: gi|125042739|gb|EL115008.1|EL115008
EST:     TTAAGAAGATGTATGACTATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAG
genomic: TTAAGAAGATGTATGAC-ATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA