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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G39460.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 3'ss of exon 3
gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
     |||     |   ||  ||       || | |   ||||   || ||  | | || || ||         |  || | || |||||||||||| |  |||||||||||||||| ||| ||||||||||| |||||| | || || || |||||||| ||||||||||||||     |    | |
----gttagcactttccttcatacttcattttatcgcttgatttgctaggt--agtgtagttaactg---accctacttgtcttccagGCCTGATGGGAAGAAGAAGGCTTACGTGAAGCTGACACCAGACTACGATGCTCTCGACGTGGCCAACAAGATTGGCATCATCTAAGTTAGGGTGCTGCAG

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 3'ss of exon 2
gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaat-atatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
||  || |   |   |  ||   | | | ||   |  |   || ||| |||    | | |  |     ||| | ||   | |  ||||||||||| || |  |||||||||||||||| ||| || ||||||||||||||| | ||||| || ||||| || |||||||| |||||         | | 
gttattaactcaccttcctttgttcatggctgaatacgc--ttcattctgtatgttgacaacttggtgtatcgattttctgtaatacagGCCTGACGGCAAGAAGAAGGCTTACGTGAAGCTCACTCCAGACTATGATGCTCTTGATGTGGCCAACAAAATTGGCATCATTTAAGTTAGGGCGCTTTTT

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G124411_T04 (Zea mays), 3'ss of exon 3
----gtactttaaagagtatttttctatgaagccttgtt-gtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG-
    | | ||     ||| || || | |   || |  ||  | |  |||   |  |   |  ||||    | | ||  |  ||  |||  ||||||||||||||  |||||||||||||||| |||||  || |||||||||||| | ||||| || ||||| |||||||||||||||   || |    || | 
gttagcatttggtccagtgttattttcttgtgcataatttattatgttgtgcaactgtgagttattcttgattgtgtct--gtcctgtc-cagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCTTATGCCTGACTATGATGCTCTTGATGTGGCCAACAAAATCGGCATCATCTAAAGTTACC-GCGTCAGG

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G083253_T04 (Zea mays), 3'ss of exon 3
gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtt-tggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
     |||     |       | | |    ||  ||   |||| ||||||||    |  |       |||  || | || |   | |||||||||||| |  |||||||||||||||| ||| || || |||||||||||| | ||||| || ||||| ||||| |||||||||||    |  |     
----gttagcacttgccccagtgtaattttttcctgcacgatttattatgttgtgcaactaaagagttattcttatcgtgtctgtgcagGCCTGATGGGAAGAAGAAGGCTTACGTGAAGCTGACTCCCGACTATGATGCTCTTGATGTGGCCAACAAAATCGGAATCATCTAAGTGCTGCATTAGGCA

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G172153_T01 (Zea mays), 3'ss of exon 11
gtactttaaagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgt---tacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAA---CAAGATCGGCATCATCTAAGTCTATCTATCTCTG
     |||     |  |    | | |     |  ||    ||  ||||||||    |  | |||   ||    ||   | |||   | ||||||||||||||  |||||||||||||||| || ||  || |||||||||||| | ||||| || |    |  | | | |    |  ||||  |  |   |   
----gttagcatttggtccagtgttattttcttgtgcataatctattatgttgtgcaattgtga-gttaattcttaactgtgtctgtccagGCCTGATGGAAAGAAGAAGGCTTACGTGAAGCCTATGCCTGACTATGATGCTCTTGATGTGGCGAGGTGCCTGCTAGACTCGGTGGAAGTGGAGTTTAGT---

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G166659_T01 (Zea mays), 3'ss of exon 3
gtactttaaagagtatttttctatgaagccttgttgtgagattgatta--tgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
           ||   ||| ||     |   | || || |  | |||   | ||   |  |  |||     |  |   || |   | |||||||||||| |  ||||||||||| ||||  || ||||| ||||| |||||  | ||||| || ||||| || ||||||||||||||  ||      |||
--------gttagcgctttgctccagtgttattttttgtgcataatttgttattttgtgcaactgagtgattcttgatgtgtccatgcagGCCTGATGGGAAGAAGAAGGCTTATGTGAAACTGACACCCGACTACGATGCCCTTGATGTGGCCAACAAAATTGGCATCATCTAAGTTAATAGGCAACTG

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA18G52310.1 (Glycine max), 3'ss of exon 3
-------gtactttaaagagtatttttctatgaagccttgttgtgag--attgattatgttcaatatatttgacactatggtttggttttgtt----acagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
       || ||| |   |  | | |   || |    || |  | ||   |  |||   ||   | |  ||  ||   ||||||  |||| ||     ||||||||||||||| ||||| || || || ||| | || |||||||||||||| |||||||| ||||||||||| || |||||||||||    || |   | 
acttggagtgcttcattaatgagtatcacataatatattatattaagcagtatatttctttgttttttattaccaacttggttttttttttttttttgcaGGCCTGATGGAACAAAGAAAGCCTATGTTAGGTTGACTCCAGACTATGATGCCTTGGATGTAGCTAACAAGATTGGTATCATCTAAGTTGTACTCTTGAT-

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA11G15230.1 (Glycine max), 3'ss of exon 3
gtactttaaagagtatttttctatgaagccttgttgtgagat-tgattatgttcaat---atatttgacactatggttt---------ggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
    || | |      ||| |  |||||   |      | || || ||  |||||||    |||||    ||    |||           || |||| ||||||||||||||||||||||||||| ||  || | || || || || ||||| |||||||| || |||||||| || || |||||||    |   |     
-ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAGGTAGTACCTAGGCA

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA11G15230.2 (Glycine max), 3'ss of exon 3
gtactttaaagagtatttttctatgaagccttgttgtgagat-tgattatgttcaata---tatttgacactatggttt---------ggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
    || | |      ||| |  |||||   |      | || || ||  |||||||    |||||    ||    |||           || |||| ||||||||||||||||||||||||||| ||  || | || || || || ||||| |||||||| || |||||||| || || |||||||              
-ggtttgagatgccgctttacagtgaagttgtagaaatatatatggtttagttcaatgaggtattttctgctgcaatttctaaatttgaattctgttgcagGCCTGATGGAACCAAGAAGGCTTATGTCCGGTTGACCCCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAAG--------------

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G10550.1 (Glycine max), 3'ss of exon 2
--------gtactttaaagagtatttttctatgaagccttgttgtgag--attgattatgttcaatatatttgacactatg---gtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
        | | |  |   | || | ||  ||  |   || |  | ||   |  |||   ||   | | |||  ||   ||    ||| ||||| |  |||||| ||||| || ||||| || || || ||| | || ||||| |||||||| |||||||| ||||||||||| || |||||||||||    || |   | 
tgtccttagaattagatttattaatattgcatagaatattatattaagcagtatatttctttgtttttttttaccaacttgcttattttgttttat-gcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCTAACAAGATTGGTATCATCTAAGTTGTACTCTTGATT

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G40780.2 (Glycine max), 3'ss of exon 2
-------------gtactttaaagagtatttttctatgaagccttgttgtgagattg-attatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
             | |  | ||| |  |  ||| |   || | |   |   |  ||  |  |  | | || | ||    | | |  |||  || |||| |||||||||||||||||||||||| || || ||| | ||||| || ||||| ||  ||||||| || |||||||| || || ||||||    || |||  |  
taggtataacaaggcaaatgaaacaacaaatttatgaaaaacttgcattcaaacttacaacagatgccatttcttctgaattttaattt--ttctgttgcagGCCTGATGGAACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAAACTAATATATGGCCT

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA12G07160.2 (Glycine max), 3'ss of exon 3
--gtactttaaagagtatttttctat----gaagccttgttgtgagattgattatgttcaatatatttgacactat-----ggtttgg-ttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTAT-CTATCTCTG
  |   || | |     ||||| ||     |  || ||||  | || ||  |         ||| |||    | ||       ||||  || |||| |||||||||||| ||||||||||| || || ||| | ||||| || || ||||| |||||||| || |||||||| || || ||||| |    | |||   || 
ttggttttgagatgccgtttttttacattggtggcattgtatttagtttagtccaacgtggtattttttctccaatttctgaatttgaattctgttgcagGCCTGATGGCACCAAGAAGGCATATGTCAGGTTGACACCTGATTACGATGCATTGGATGTGGCAAACAAGATTGGGATTATCTAGGGTAGTACTAGTACT-

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtacttta--aagagtatttttctatgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
             |||| |  | || |||  |       |   || || ||      | ||| ||| | |  | |      ||   ||  || || | |||||||||||| ||||||||||| || || ||| | || |||||||||||||| |||||||| || ||||| || || ||||||||||      | | ||| 
ttagattggataaacttaattatgaatatcctgagcaagaatgttcttttgctgggaaatattttcgacaactcttctgacattaattt-ttgtgatccagGCCTGATGGTACCAAGAAGGCGTATGTTAGGTTGACCCCAGACTATGATGCCTTGGATGTGGCCAACAAAATTGGGATCATCTAAGGTAGGATCTGTCTA

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 3'ss of exon 2
gtactttaaagagtatttttcta-----tgaagccttgttgtgagattgat-tatgttcaatatatttgacactatgg----tttggt--tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
 | |||  |    ||| | || |     ||  |  || || |   | |  | ||  ||   || ||||    ||||      ||| ||  ||| || |||||||||||| || ||||| || || || ||| | || ||||| ||||||||||||||||| || |||||||| || || || |||   ||   | |    
tttcttatatatatatatatcgagttggtggtgttttctttttccagttttatacctttcctaaattttgttctatatatccttttgtcttttatttcagGCCTGATGGGACAAAGAAAGCATATGTTAGGTTGACGCCAGATTATGATGCTTTGGATGTGGCAAACAAGATTGGTATTATTTAAAA-TAGTAACCA---

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 3'ss of exon 3
-------gtactttaaa-gagtatttttctatgaagccttgt--tgtgagattgattatgttcaatatatttgacactatggtttggttttgt--tacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTAT-CTATCTCTG
       ||    || | | | ||  | | | |  |  | |   ||||  || |    |||  |||  || |||    |   | |   |||||  | ||||||||||||||||||||||||||| || ||| | ||||| ||||||||||| |||||||| || ||||||||||| ||||||||| |||||  |  || | 
cagaatggtgtgatatatgggcatcataccaagtggattagcgatgtggcatagtggttgtcaaattgatatgaactaaccttctatctttgtgttgcagGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCGGACTATGATGCCTTGGATGTGGCAAACAAGATCGGGATCATCTAAATCTATATTGCCTTT-

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S46_72V6.1 (Physcomitrella patens), 3'ss of exon 1
----gtactttaaagagtatttttctatgaagccttgt-tgtgagattgattatgt-tcaatatatttgacactatggtttggttt------tgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
    |  | |  | |  |   || ||     |  || | | | |       | |   || ||| ||       | |    |    |      | || ||||||||||||| |||||||||| |||||| | || ||  |||||||||| ||  |||| || || ||||||||||| ||||||||  |  |  | ||| | 
gatggagcctctacgcatggattgctggagtggtttatatataaacgcacctgtacatctatacatacatttatctaacctatcctctacaatatttcagGCCTGATGGAGCCAAGAAGGCGTACGTGCGACTCACGGCAGACTATGACGCGCTGGACGTGGCCAACAAGATCGGTATCATCTAGATTGAAGTTTCTGTT

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 3'ss of exon 1
---gtactttaaaga----gtatttttctatgaagccttgttgtgagattgatt----atgttcaatatatttgacactatggtttggtt-ttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
    |  |||   ||    |||||  | |   |   | ||||   |      |     ||||  ||| | |       |    |||   | || |  ||||||||||||| ||||||||||||||||||| || ||| |||| ||||||||  | ||||| || ||||||||||| ||||| ||| | |     ||  | 
taattttttttgggatttcgtattgatttgatatcacctgttcccattcctctctaggatgtgaaatttctaatgtggtcaaatttatctattttctcagGCCTGATGGAGCCAAGAAGGCTTACGTGAGACTGACAGCAGATTATGATGCGCTTGATGTGGCCAACAAGATCGGTATCATATAAATTTTCTGTTCAATT

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ09823 (Selaginella moellendorffii), 3'ss of exon 2
---------------------------------------------------------------------------gtactttaaagagtatttttct-atgaagccttg--ttgtgagattg--attatgttca---atatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
                                                                             | ||    |    ||| ||| ||  |   |||  ||   || ||   ||| | ||||   ||    ||  |||| | ||||   ||| || ||| ||||||||    |||||||| ||||||||||||||| |||||   || ||||||||||| || |||||||| |||||||||||||   | || || |  
gtaatctttctttctttctttcctcggtggtagtctagtgtgtcttttcgattcacttcttcgtgtgtgggcttaccatttcttggttcgtttgtctgattgatttttggctttccagcttctcattgttttcattcatgggcttaccactttcgttt---ttttttccagACCTGATGGGCTGAAGAAGGCGTACGTGAGGCTTACAGCAGACATCGACGCTTTGGATGTGGCGAACAAGATTGGCATCATCTAAGCTAAGCTTTCCCGA

upper sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ15194 (Selaginella moellendorffii), 3'ss of exon 2
---------------------------------------------------------------------------gtactttaaagagtatttttct-atgaagccttgttgtgagattgattatgttcaatatatttgacactatggtttggtt--ttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
                                                                               ||    |    ||| ||| ||  |   | | | |     |  | ||  |    ||   ||    ||    ||  ||  || || ||| ||||||||    |||||||| ||||||||||||||| |||||   || ||||||||||| || |||||||| |||||||||||||   | |  || |  
gtaatctttctttctttctttcctcggtggtagtctcgtttgtcttttcaattcacttcttcgtgtgtgggcttaccgtttcttggttcttttgtctgattgattttggctttctagcttctcattgttttcattcatgggcttaccactttcttcttttttccagACCTGATGGGCTGAAGAAGGCGTACGTGAGGCTTACAGCAGACATCGACGCTTTGGATGTGGCGAACAAGATTGGCATCATCTAAGCTAAGCCTTCCCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828686|gb|CK118370.1|CK118370
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47831112|gb|CK120796.1|CK120796
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|125298764|gb|EL312849.1|EL312849
EST:     GAACACACTCATCAG                         GCCTGATGGAACCTAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATG
genomic: GAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACC-AAGAAGGCTTACGTGAGGCTTACACCAGACTATGATG
EST: gi|164033201|gb|ES111493.1|ES111493
EST:     CATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|163988999|gb|ES040254.1|ES040254
EST:     GAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGG
genomic: GAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGG
EST: gi|86077798|gb|DR373555.1|DR373555
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124774941|gb|EH865070.1|EH865070
EST:     AGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTA
genomic: AGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTA
EST: gi|164089324|gb|EL981220.1|EL981220
EST:     CAAGAAAGTGAACNCACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124956210|gb|EL031158.1|EL031158
EST:     ACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: ACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47828593|gb|CK118277.1|CK118277
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|125017478|gb|EL089747.1|EL089747
EST:     AAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTAC
genomic: AAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTAC
EST: gi|164226645|gb|ES070159.1|ES070159
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGAC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGAC
EST: gi|164053832|gb|EL968549.1|EL968549
EST:     CAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124951728|gb|EL027068.1|EL027068
EST:     CAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGA
genomic: CAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGA
EST: gi|86081160|gb|DR376917.1|DR376917
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|47828679|gb|CK118363.1|CK118363
EST:     GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
genomic: GTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGC
EST: gi|124765768|gb|EH855898.1|EH855898
EST:     GTATGACATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTA
genomic: GTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTA
EST: gi|125042739|gb|EL115008.1|EL115008
EST:     TTAAGAAGATGTATGACTATCCAGACCAAGAAAGTGAACACACTCATCAG                         GCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAG
genomic: TTAAGAAGATGTATGAC-ATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaa ... tttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgagattgattatgttcaatatatttgacactatggtttggttttgttacagGCCTGATGGAACCAAGAAGGCTTACGTGAGGCTTACACCAGACTATGATGCTTTGGATGTTGCTAACAAGATCGGCATCATCTAAGTCTATCTATCTCTG
                         atttgac  putative branch site (score: 4)
                                            ttttgtt  putative PPT
       attgattatgttcaat  TA-rich tract