1 5' 3' | 2 5' 3' | 3 5' 3' |
gttcgtgtctcgattttgcaaactatctctcgaaatcgtcctacatttctttcttcagattcattactgagcttcgctttctgggtttctatctaaaaatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
species | Arabidopsis thaliana |
transcript | AT2G39460.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAATCAGCTGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGEST: gi|47828686|gb|CK118370.1|CK118370
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: GCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|125265181|gb|EL279266.1|EL279266
genomic: GCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: TCAGCGGCCTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|124992081|gb|EL064350.1|EL064350
genomic: TCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|125017078|gb|EL089347.1|EL089347
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|124796381|gb|EH886060.1|EH886060
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GAGAACCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|47831112|gb|CK120796.1|CK120796
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: CACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|124925605|gb|EL003560.1|EL003560
genomic: CACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATAEST: gi|125061286|gb|EL129925.1|EL129925
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATA
EST: CACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTTAAAGEST: gi|124730912|gb|EH822314.1|EH822314
genomic: CACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCT-AAAG
EST: GAGAATCAGCGGCTTCACCTCTACCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGEST: gi|164178270|gb|EL970199.1|EL970199
genomic: GAGAATCAGCGGCTTCACCTCT-CCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: GAATCAGCTGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCEST: gi|164134732|gb|ES062932.1|ES062932
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGC
EST: CAGCTGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|124847727|gb|EH932164.1|EH932164
genomic: CAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCEST: gi|125058850|gb|EL127527.1|EL127527
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTC
EST: GAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGEST: gi|125248687|gb|EL262772.1|EL262772
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGEST: gi|125106039|gb|EL159627.1|EL159627
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCATGTGTGAAGAATCATTTCAAGCCATGTCTCCGGEST: gi|124738762|gb|EH829960.1|EH829960
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGAEST: gi|124836153|gb|EH920592.1|EH920592
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGA
EST: GAGAATCAGCGGCTTCACCTATCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGEST: gi|124888083|gb|EH966985.1|EH966985
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
EST: GTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAEST: gi|152035347|gb|BP851163.2|BP851163
genomic: GTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCA
EST: GAGAATCAGCGGCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGEST: gi|164106775|gb|ES168279.1|ES168279
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: GCTTCACCTCTCCAG ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
cttcagattcattactgagcttcgctttctgggtttctatctaaaaatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
atctaaa putative branch site (score: 3)
tttctatctaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgtctcgattttgcaaactatctctcgaaatcgtcctacatttctttcttcagattcattactgagcttcgctttctgggtttctatctaaaaatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA