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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATAGACCCAACTAAGTATCTTAGGGTTTCAGTTTCCACTATAAAACTTGTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtctcgattttgcaaactatctctcgaaatcgtcctacatttctttcttcagattcattactgagcttcgctttctgggtttctatctaaaaatttcacag

Basic information

species Arabidopsis thaliana
transcript AT2G39460.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164210296|gb|ES086440.1|ES086440
EST:     GAGAATCAGCTGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: gi|47828686|gb|CK118370.1|CK118370
EST:     GCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|125265181|gb|EL279266.1|EL279266
EST:     TCAGCGGCCTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: TCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|124992081|gb|EL064350.1|EL064350
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|125017078|gb|EL089347.1|EL089347
EST:     GAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|124796381|gb|EH886060.1|EH886060
EST:     GAGAACCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|47831112|gb|CK120796.1|CK120796
EST:     CACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: CACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|124925605|gb|EL003560.1|EL003560
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATA
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGATA
EST: gi|125061286|gb|EL129925.1|EL129925
EST:     CACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTTAAAG
genomic: CACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCT-AAAG
EST: gi|124730912|gb|EH822314.1|EH822314
EST:     GAGAATCAGCGGCTTCACCTCTACCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
genomic: GAGAATCAGCGGCTTCACCTCT-CCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: gi|164178270|gb|EL970199.1|EL970199
EST:     GAATCAGCTGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGC
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGC
EST: gi|164134732|gb|ES062932.1|ES062932
EST:     CAGCTGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: CAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|124847727|gb|EH932164.1|EH932164
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTC
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTC
EST: gi|125058850|gb|EL127527.1|EL127527
EST:     GAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
genomic: GAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
EST: gi|125248687|gb|EL262772.1|EL262772
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: gi|125106039|gb|EL159627.1|EL159627
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCATGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGG
EST: gi|124738762|gb|EH829960.1|EH829960
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGA
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTGA
EST: gi|124836153|gb|EH920592.1|EH920592
EST:     GAGAATCAGCGGCTTCACCTATCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAGTTG
EST: gi|124888083|gb|EH966985.1|EH966985
EST:     GTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCA
genomic: GTTGCGGCGTAAGTTAGGGTTTTGAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCA
EST: gi|152035347|gb|BP851163.2|BP851163
EST:     GAGAATCAGCGGCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GAGAATCAGCGGCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
EST: gi|164106775|gb|ES168279.1|ES168279
EST:     GCTTCACCTCTCCAG                         ATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG
genomic: GCTTCACCTCTCCAGgttcgtgtct ... aatttcacagATTTCGTGTGTGAAGAATCATTTCAAGCCATGTCTCCGGCTAAAG