1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tataggttcataaaccaaacgcgttaacagtatctaacctattgatgttgtttgcatggttttccagctcaattaacgtctattgtgtggacctgtgcagGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAG
species | Arabidopsis thaliana |
transcript | AT2G39140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTG GTTCACGAAGGAAGAAATEST: gi|125013133|gb|EL085402.1|EL085402
genomic: AGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGgtacttttcc ... acctgtgcagGTTCACGAAGGAAGAAAT
EST: AGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTG GTTCACGAAGGAAGAAATCATGAAGTCAGGGAA
genomic: AGTTGATGCCAAAGCAGCATGATATACCAAGAGCAAGGCTGCGTATAGTGgtacttttcc ... acctgtgcagGTTCACGAAGGAAGAAATCATGAAGTCAGGGAA
tgttgtttgcatggttttccagctcaattaacgtctattgtgtggacctgtgcagGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAG
aattaac putative branch site (score: 2)
tcaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataggttcataaaccaaacgcgttaacagtatctaacctattgatgttgtttgcatggttttccagctcaattaacgtctattgtgtggacctgtgcagGTTCACGAAGGAAGAAATCATGAAGTCAGGGAATTAGTGAAAAATGCTGGGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - cataaac
- - - - - - - -caaacgc
- - - - - - - - - - - - -aacagta
- - - - - - - - - - - - - - - - tctaacc