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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtattaattgaactccatgtgttatgttatatatcttggtttgtacattttggttcaaggaactatgtttctcttcccttcttctaaaaagaatttcaacttcttgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA

Basic information

species Arabidopsis thaliana
transcript AT2G39140.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124828103|gb|EH912969.1|EH912969
EST:     CGGGATTGATAGTTGTTACAAATGATG                         GAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA
genomic: CGGGATTGATAGTTGTTACAAATGATGgtaattgtat ... tgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA
EST: gi|124750703|gb|EH840833.1|EH840833
EST:     TGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATG                         GAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAA
genomic: TGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGgtaattgtat ... tgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactatgtttctcttcccttcttctaaaaagaatttcaacttcttgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA
                      ttctaaa  putative branch site (score: 2)
                                        cttcttgct  putative PPT
                      ttctaaaaagaattt  TA-rich tract