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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacattttgttttcctgtacataaaacgttgtcttttaaagtatgttagattagaaaacttggtttaagaatcttgtctttgcaatgtagGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATG

Basic information

species Arabidopsis thaliana
transcript AT2G39140.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39140.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G315806_T01 (Zea mays), 3'ss of exon 4
gtaagacattttgttttcctgtacataaaacgttgtcttttaaagtatgttagattagaaaacttggtttaagaatcttgtctttgcaatgtagGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATG
     |  ||   |       |    | ||| ||   |||  |  ||| || | |   ||| ||   ||  |        | ||| ||    | |||  ||     || |||   || ||||| ||| | |||||||| ||||||||||||||||||||  | ||  ||||| | || ||||||||||
---gtatgttccatacagggctg-gcataacattcattttgtacatatattgggt---aaatctctattatacctatgcatatttacagAACAAGATTCAA-----CCAGGGTTGCCAAAACCACGCTTGTTTACTGTGGGTCGTCTTGATGTTGCCACGGCTGGTCTGATAATAGTCACAAATGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164150499|gb|ES204022.1|ES204022
EST:     AGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTTAGG                         GATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGT
genomic: AGAGATCAAATCTGCTATTAGTTTGTTTGACGAGTACTTGTCCTCTT-GGgtaagacatt ... tgcaatgtagGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagtatgttagattagaaaacttggtttaagaatcttgtctttgcaatgtagGATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATG
                                    tcttgtcttt  CT-rich tract
              attagaaaa  TA-rich tract