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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGgtaattgtattaattgaactccatgtgttatgttatatatcttggtttgtacattttggttcaaggaactatgtttctcttcccttcttctaaaaagaatttcaacttcttgctatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G39140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g05806.1 (Oryza sativa), 5'ss of exon 5
GATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGgtaattgtattaattgaactccatgtgttatgttatatatcttggtttgtacattttggt--tcaaggaactatgtttctcttcccttcttctaaaaagaatttcaacttcttgctatgcag
 | || |   | || ||    || ||||| ||| | |||||||| ||||||||||||||||| ||||  || |||||| |  |||||||||| |||||||  |||            | | | ||  || |||  | ||  |  | ||||||    || |  | |||   ||   ||   |   | | |                           
AACAAGATTCAACCAGGAGTACCAAAACCGCGCTTGTTTACTGTGGGTCGTCTTGATGTTGCTACAAGTGGTTTGATAATAATTACAAATGACGgtaatttcattg-----------tatttcataataaatacttgggaatcaatattttgaccatccaatacctaaagttagtttgtttctctttcag--------------------------

upper sequence: AT2G39140.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G315806_T01 (Zea mays), 5'ss of exon 5
GATAAAAGGAATCCGGGGACTCCCAAACCTCGCCTTTTTACTGTTGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGgtaattgtatta-attgaactccatgtgttatgttatatatcttggtttgtacattttggttcaaggaactatgtttctcttcccttcttctaaaaagaatttcaacttcttgctatgcag
 | || |   | || |||   || ||||| ||| | |||||||| ||||||||||||||||||||  | ||  ||||| | || |||||||||||||| |  || | ||  |     ||||  | | | |  |||      |    |||||||| |     |  || ||  || ||  || |   || | |  ||                    
AACAAGATTCAACCAGGGTTGCCAAAACCACGCTTGTTTACTGTGGGTCGTCTTGATGTTGCCACGGCTGGTCTGATAATAGTCACAAATGATGgtaagttgatcatatgtagtaatatgtactctctcagttatagattgtaagtcattttggcttttctagatacgtaactttttact-cagatatacattat--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124828103|gb|EH912969.1|EH912969
EST:     CGGGATTGATAGTTGTTACAAATGATG                         GAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA
genomic: CGGGATTGATAGTTGTTACAAATGATGgtaattgtat ... tgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAAAGA
EST: gi|124750703|gb|EH840833.1|EH840833
EST:     TGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATG                         GAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAA
genomic: TGGTCGTCTTGATGTTGCCACAACGGGATTGATAGTTGTTACAAATGATGgtaattgtat ... tgctatgcagGAGATTTCGCACAGAAACTTTCACATCCTTCATCTAGTTTACCGAA