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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacagatatcattatatcgatcacctacctctctttgaatatttcgatttggtttggtttatgcaacccctacaatatttacaattgcgtttgatttctgtagGTGTGGGCACATGTGCACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGGAAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGC

Basic information

species Arabidopsis thaliana
transcript AT2G34920.1
intron # 5
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttggtttatgcaacccctacaatatttacaattgcgtttgatttctgtagGTGTGGGCACATGTGCACATGCCTGAGATGCGCAAACGAACTACAATATAATGGCGGGAAATGCCCGATTTGTCATGCCAAGATTCTAGACGTTGTTCGC
                                        gtttgat  putative branch site (score: 5)
                                              tttctgt  CT-rich tract
                      tacaatatttacaatt  TA-rich tract