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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcaagaacctctgttttacgtcctacaagttcatgaactcatttttctcctctccttaatgtttaaatcataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGCAGTCAAAAGAA

Basic information

species Arabidopsis thaliana
transcript AT2G34920.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116390381|gb|EG432973.1|EG432973
EST:     AAAAGCGATTTGAATCGCTTCCAACCTAGTCCTACAATTCTCCATCTAAG                         AGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
genomic: AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAGgtatgctcaa ... cataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
EST: gi|116390527|gb|EG433119.1|EG433119
EST:     AAGCGA-TTGAAATCGCTTCCAA-CTAGTTTCTACAATTCTCCATCTAAG                         AGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCC-GACTAAA
genomic: AAGCGATTTG-AATCGCTTCCAACCTAG-TTCTACAATTCTCCATCTAAGgtatgctcaa ... cataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
EST: gi|116390525|gb|EG433117.1|EG433117
EST:     AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAG                         AGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
genomic: AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAGgtatgctcaa ... cataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
EST: gi|116390528|gb|EG433120.1|EG433120
EST:     AAAAGCGATTTGAATCGCTCCCAACCTAGTTCTACAATTCTCCATCTAAG                         AGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
genomic: AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAGgtatgctcaa ... cataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
EST: gi|116390385|gb|EG432977.1|EG432977
EST:     AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAG                         AGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA
genomic: AAAAGCGATTTGAATCGCTTCCAACCTAGTTCTACAATTCTCCATCTAAGgtatgctcaa ... cataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaagttcatgaactcatttttctcctctccttaatgtttaaatcataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGCAGTCAAAAGAA
                              ccttaat  putative branch site (score: 4)
                                ttaatgtttaaatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctcaagaacctctgttttacgtcctacaagttcatgaactcatttttctcctctccttaatgtttaaatcataatgcagAGAAAAACTCCGGGAAAAAGCAGCAAACGCTGCCGCTGAAGCCGGACTAAAGAAGGGTCAACAATCCACCGTAGAAACAGAGAGCATGCAGTCAAAAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA