1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaacattatcagagaagagagaaacctttttttctttttcaaaaaatccttaatttagttctatggattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAGCTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAA
species | Arabidopsis thaliana |
transcript | AT2G34920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG AAGAACGGTTTCGGGTTTCCTCCAAAGCEST: gi|116390525|gb|EG433117.1|EG433117
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGC
EST: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG AAGAACGGTTTCGGGTTTCCTCCAAAEST: gi|116390385|gb|EG432977.1|EG432977
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAA
EST: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG AAGAACGGTTTCGGGTTTCCTCCAAAEST: gi|116390532|gb|EG433124.1|EG433124
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAA
EST: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG AAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAA
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAA
gaaacctttttttctttttcaaaaaatccttaatttagttctatggattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAGCTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAA
ccttaat putative branch site (score: 4)
tttttttctttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacattatcagagaagagagaaacctttttttctttttcaaaaaatccttaatttagttctatggattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAAGCTCATAATGTCCCGTGTTCAGATACATCCGGCTCACCGGATTGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA