Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGGCCTCGGACTTATTGGGAAGATCTGAGGAAATCTCGGTATCTGGAAGTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacattatcagagaagagagaaacctttttttctttttcaaaaaatccttaatttagttctatggattatacag

Basic information

species Arabidopsis thaliana
transcript AT2G34920.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116390381|gb|EG432973.1|EG432973
EST:     GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG                         AAGAACGGTTTCGGGTTTCCTCCAAAGC
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGC
EST: gi|116390525|gb|EG433117.1|EG433117
EST:     GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG                         AAGAACGGTTTCGGGTTTCCTCCAAA
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAA
EST: gi|116390385|gb|EG432977.1|EG432977
EST:     GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG                         AAGAACGGTTTCGGGTTTCCTCCAAA
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAA
EST: gi|116390532|gb|EG433124.1|EG433124
EST:     GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAG                         AAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAA
genomic: GTGATGAACACTAAATCTGACAAGGACGATATATGCAGACTTCTTGAGAGgtaaacatta ... gattatacagAAGAACGGTTTCGGGTTTCCTCCAAAGCGGATTACGAGAGAAGATCGATAA