1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttacatatttgtcagcattgagtttttcaaaggctgcattattggaatttgtgattccatagttaatggagcattattggaatttgtcaatatctatgcactgacagcttaaaatcgaactgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAATGGAAGCAACTCTGTTCGCTACACTCATGTCAATCTCTAACGGAGGCA
species | Arabidopsis thaliana |
transcript | AT2G32040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAG GCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAEST: gi|86076679|gb|DR372436.1|DR372436
genomic: ACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAGgtttacatat ... actgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGA
EST: TGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAG GCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAEST: gi|86081307|gb|DR377064.1|DR377064
genomic: TGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAGgtttacatat ... actgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGA
EST: ACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAG GCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGA
genomic: ACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGCTCAGgtttacatat ... actgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGA
ttattggaatttgtcaatatctatgcactgacagcttaaaatcgaactgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAATGGAAGCAACTCTGTTCGCTACACTCATGTCAATCTCTAACGGAGGCA
cactgac putative branch site (score: 2)
aatatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacatatttgtcagcattgagtttttcaaaggctgcattattggaatttgtgattccatagttaatggagcattattggaatttgtcaatatctatgcactgacagcttaaaatcgaactgtaacagGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAATGGAAGCAACTCTGTTCGCTACACTCATGTCAATCTCTAACGGAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA