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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttttgtagttccttgttggactttcatgggaatatctctttataggctgacaaatatatacctcttgactagACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTCTATGGTTTTATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G32040.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32040.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G28510.1 (Glycine max), 3'ss of exon 3
--gtatgctttttgtagttccttgttggact--------ttcatgggaatatct----------ctttataggctgacaaatatatacc-tcttgactagACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTCTATGGTTTTATCAG
    || ||  |  |  |||||| ||||| |        |  |  | ||||| |          | |  ||       | ||  |||   | |||||||| ||||||||||  | ||| ||||| |||||||||||||||| || ||||| || || ||||| ||
tgaaattctgatactttttcctttttggattgaatcaactatacagtaatatttgaagtactgacatgttacatcattacatgcataatatgttgactagGCAGCTGTGATTTCTGGTTTTTCTGCATTGCCGTGGCTTGTCAAACCTCTTTACGGGTTTATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448948|gb|EG491540.1|EG491540
EST:     TCGCTGTTAGTTTCTATTTAAAAGATGACTTGCATCTTGATCCTGCTGAG                         ACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTC
genomic: TCGCTGTTAGTTTCTATTTAAAAGATGACTTGCATCTTGATCCTGCTGAGgtatgctttt ... tcttgactagACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggactttcatgggaatatctctttataggctgacaaatatatacctcttgactagACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTCTATGGTTTTATCAG
                           ggctgac  putative branch site (score: 3)
                                         tacctctt  putative PPT
             aatatctctttata  TA-rich tract