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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggttcatgccttcatggttattggcttatttcatattctctggaatgtattaactagtctctaactaattttatttggtacaaatttcacctcag

Basic information

species Arabidopsis thaliana
transcript AT2G32040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g58080.1 (Oryza sativa), 5'ss of exon 6
TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggtt-catgccttcatggttattggcttatttcatattctctggaatgtattaactagtctctaactaattt-tatttggtacaaatttcacctcag
| ||| || |  | |||||||| ||| | || || |||||||| || |||||| | |||||||| |||||||| ||||||||||| ||||||| ||||| |||||| |||     ||   ||   ||  || || | | | | |   | |   |||      |   | | ||| |||    |||  ||||  |  || |  ||   |        
TTTGGAGTTCAGTAAAGCAACCCAATATCTTCCTACCCACCTTGTTCATATTCCTTTGGCAAGCAACACCACAATCAGATTCTGCCATGTTTTTCTTCATgtatgttctcacatgctcacttgtttggtttgattgctctagacagctgttggatt------aggttttcaaccagtg---aacagatttacaactgttggaagagttg------

upper sequence: AT2G32040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G469469_T01 (Zea mays), 5'ss of exon 6
TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggttcatgccttcatggttattgg-cttatttcatattctctggaatgtattaactagtctctaactaattttatttggtacaaatttcacctcag
| |||  | |  | ||||| || ||  | ||  | || ||||| ||||||||  | |||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||       |||  | || |   | ||   | | || | |||   |||||| ||   ||   |||     |  ||   | | |   ||   |   | ||         
TTTGGACTTCAGTAAAGCAGCCTAACATATTGTTGCCGACCTTGTTTATATTTCTTTGGCAAGCAACACCACAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtccaaaaaatctt--taca-gtactgatctgtgtgggtcctatactatattc-ctatcatagcttattcgcttactgtttgact--gttgcattggagtta--------

upper sequence: AT2G32040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G027603_T01 (Zea mays), 5'ss of exon 5
TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggttcatgccttcatggttattggcttatttcatattctctggaatgtattaactagtctctaactaattttatttggtacaaatttcacctcag
| |||| | |  | |||||||| ||  ||||  | || ||||| ||||||||  | |||||||| ||||| || ||||||||||| ||||||| ||||| ||||||    |   |  |  ||   || || ||   ||| |   | | | || |||  |||  | | |  | || ||| |  ||   ||   ||||    |||| ||      
TTTGGGCTTCAGTAAAGCAACCTAACATTTTGTTGCCGACCTTGTTTATATTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCATgtatgta---tgaaaaattattacggcattaat--ctat-gatgtgtcttatcttca-tggcttat-tcgattactctttggctg--ttgcattggagttaattgcaatc---

upper sequence: AT2G32040.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0020g03660.t01 (Vitis vinifera), 5'ss of exon 6
TATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctcttccacttggttcatg------ccttcatggttattggcttatttc--atattctctggaatgtattaactagtctctaac---------taattttatttggtacaaatttcacctcag
| |||| |||  | | ||| |  ||| | ||||| ||||||||||| || ||| | ||||| || ||||||||||| || ||||| ||||||||||| ||||||||    | |    | ||  ||       ||||||   | | ||  ||| | |  ||      |||||  |  | | || |   || |          ||| |||     |     | | |  ||||
TGTGGGATGCTGTCAGGCAGCGTAATATATTTCTTCCCACCTTATTCATTTTCCTCTGGCAGGCAACACCACACTCGGACTCTGCCATGTTTTACTTTACgtatgttgaatccttgattgtgaatattttgcccttcactttcagtgatttaatcctaatgccacttggaaaattctcattatttcttagcatcttctttcaatcttaacaattgatcttcttatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448951|gb|EG491543.1|EG491543
EST:     TTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCAC                         AACGAACAAACTCGGTTTTACCCCGGAGTTTCTGGGACGAGTTAAACTTGT
genomic: TTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctc ... ttcacctcagAACGAACAAACTCGGTTTTACCCCGGAGTTTCTGGGACGAGTTAAACTTGT
EST: gi|86081307|gb|DR377064.1|DR377064
EST:     TTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCAC                         AACGAACAAACTCGGTTTTACCCCGGAGTTTCTGGGACGAGTTAAACTTGT
genomic: TTCTTATGGCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACgtatgtcctc ... ttcacctcagAACGAACAAACTCGGTTTTACCCCGGAGTTTCTGGGACGAGTTAAACTTGT