1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTCAGGATCGCTGCAGTCTTTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATATGGTGTGAGgtacagttcacaatttgcgcaaacagtagcttttctctttttcggtattccgtggcatagctaactaactaagtggcattctaaaagctgttatacctcag
species | Arabidopsis thaliana |
transcript | AT2G32040.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATATGGTGTGAGCTGTTATACCTCAGEST: gi|124823923|gb|EH908789.1|EH908789
genomic: ATTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATAT-G-GT--G-TG---------AGgtacagttca .
EST: TTTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATATGGTGTGAG GTTTGTATTTGGGGTGACAGCTTTACTA
genomic: -TTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATATGGTGTGAGgtacagttca ... tatacctcagGTTTGTATTTGGGGTGACAGCTTTACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCAGGATCGCTGCAGTCTTTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTTAGCGGCTCCCTGGTGGAGTCATATGGTGTGAGgtacagttcacaatttgcgcaaacagtagcttttctctttttcggtattccgtggcatagctaactaactaagtggcattctaaaagctgttatacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG