Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcctaaatgcttatttcctcctgagaaactttgatacaagtattaagtatagaaactgtttctactattgatatactcataagttataagaatggtccatttccatgaggcaatagtttaaacagatgattttttttgttgtttgcagATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGATTCTTACTCTTTTGGTGTCGTATTATATGAG

Basic information

species Arabidopsis thaliana
transcript AT2G31800.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125217213|gb|EL231296.1|EL231296
EST:     ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAA                         ATTACTGTATGGCACCTGAGGTTTACAAAGATGAAA
genomic: ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAAgtaagtccta ... ttgtttgcagATTACTGTATGGCACCTGAGGTTTACAAAGATGAAA
EST: gi|164108509|gb|ES180080.1|ES180080
EST:     ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAA                         ATTACTGTATGGC
genomic: ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAAgtaagtccta ... ttgtttgcagATTACTGTATGGC
EST: gi|124706788|gb|EH798190.1|EH798190
EST:     ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAA                         ATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGA
genomic: ATCTGATAAATCAAAAATCCTTAATCACGGGGCCCATATAGATCCTTCAAgtaagtccta ... ttgtttgcagATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtccatttccatgaggcaatagtttaaacagatgattttttttgttgtttgcagATTACTGTATGGCACCTGAGGTTTACAAAGATGAAATATTTGACAGGAGTGTGGATTCTTACTCTTTTGGTGTCGTATTATATGAG
                                    ttttttttgttgttt  CT-rich tract
                       tttaaacagatgattt  TA-rich tract