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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagatctctctttgctttactttcctgtaataatgtcttagtttccatttatagatttttaacaagatactacatcacttttccacttgccagGGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATACTTGATAAGGATCTCTACAAGGATTCTGACACTAT

Basic information

species Arabidopsis thaliana
transcript AT2G31800.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124919720|gb|EH993458.1|EH993458
EST:     TTCGGAAAGCTGATGGTATCTCAAAG                         GGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATA
genomic: TTCGGAAAGCTGATGGTATCTCAAAGgcaagatctc ... cacttgccagGGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATA
EST: gi|164037902|gb|ES155231.1|ES155231
EST:     AGCTGATGGTATCTCAAAG                         GGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTATCTGTAAAGATA
genomic: AGCTGATGGTATCTCAAAGgcaagatctc ... cacttgccagGGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttccatttatagatttttaacaagatactacatcacttttccacttgccagGGAATATATCAAGTGGCTAAATGGAATGGGACTAAGGTTTCTGTAAAGATACTTGATAAGGATCTCTACAAGGATTCTGACACTAT
                  ttttaac  putative branch site (score: 2)
 tcacttttccactt  putative PPT
 atttatagatttttaa  TA-rich tract