1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCCTAAACCCCCAGAAGAGGCAGTGAAGCTAATGTGTTTAGAAGGAAGAAGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAgtaagtgtactaagctttatcaactttaaaacagaacttgttttacactttaagttacagtaacatcatttgcttggtccttgatcctttacccaacctctttgagcttatttggttcaattgttatttaaacag
species | Arabidopsis thaliana |
transcript | AT2G31800.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGA ATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGACCAACATTTTCEST: gi|124756326|gb|EH846456.1|EH846456
genomic: AGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAgtaagtgtac ... atttaaacagATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGACCAACATTTTC
EST: GTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGA ATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGGCCAACATTTTCEST: gi|19743039|gb|AU228392.1|AU228392
genomic: GTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAgtaagtgtac ... atttaaacagATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGACCAACATTTTC
EST: AGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGA ATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGACCAACATTTTC
genomic: AGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAgtaagtgtac ... atttaaacagATTGATTGAGGAATGCTGGGATACGGAAACTTTTGTTAGACCAACATTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTAAACCCCCAGAAGAGGCAGTGAAGCTAATGTGTTTAGAAGGAAGAAGACCTTCGTTTAAAGCCAAGTCCAAAAGTTGTCCCCAAGAGATGAGAGAgtaagtgtactaagctttatcaactttaaaacagaacttgttttacactttaagttacagtaacatcatttgcttggtccttgatcctttacccaacctctttgagcttatttggttcaattgttatttaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG