1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaaaaactttctcttaacaactctttatcatttatgtttttgcatttctacttccaccttagttaagccgacttcttctaagatcgtgatttttcttatccataacggactagagccaagctctttatatatatcatgattttttctctcacccaaatgtatgatttctcagGAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCCACAATTCAAGAGCTCTCTTCTCATGTTTACAATAAACTCGATACAAAGA
species | Arabidopsis thaliana |
transcript | AT2G31800.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTG GAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCCEST: gi|19743039|gb|AU228392.1|AU228392
genomic: GTACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGgtaaaaaaac ... gatttctcagGAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCC
EST: GTACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTG -AAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCC
genomic: GTACACTGCTCAAAACAGGGATGGTGGAAAGATACATTCAAGTTCCCTTGgtaaaaaaac ... gatttctcagGAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCC
aagctctttatatatatcatgattttttctctcacccaaatgtatgatttctcagGAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCCACAATTCAAGAGCTCTCTTCTCATGTTTACAATAAACTCGATACAAAGA
ctctcac putative branch site (score: 3)
tttctc putative PPT
tttatatatatcatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaactttctcttaacaactctttatcatttatgtttttgcatttctacttccaccttagttaagccgacttcttctaagatcgtgatttttcttatccataacggactagagccaagctctttatatatatcatgattttttctctcacccaaatgtatgatttctcagGAAATAGTACATAAGAACGTGAGAGGTTTACTCAGGAACACGAGAAACTCCACAATTCAAGAGCTCTCTTCTCATGTTTACAATAAACTCGATACAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT