Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAGCAATCAGgtgaatgtcagcccgatgtccgaacattatatatggcctttattcggactcttttttttttttttgtaaatctctaactctctgtgcaaactctttccag

Basic information

species Arabidopsis thaliana
transcript AT2G27680.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124714219|gb|EH805621.1|EH805621
EST:     TGGAATCCCTGTCGTTAGCAATCAG                         GTGCAACACTCCTATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCT
genomic: TGGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCC-ATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCT
EST: gi|125146801|gb|EL181341.1|EL181341
EST:     CCCTGTCGTTAGCAATCAG                         GTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
genomic: CCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
EST: gi|124929643|gb|EL007170.1|EL007170
EST:     AGAATGGAATCCCTGTCGTTAGCAATCAG                         GTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
genomic: AGAATGGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
EST: gi|125220875|gb|EL234960.1|EL234960
EST:     CTTAGAGAATGGAATCCCTGTCGTTAGCAATCAG                         GTGCAACACTCCATTGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
genomic: CTTAGAGAATGGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
EST: gi|125314313|gb|EL328398.1|EL328398
EST:     GAATGG-ATCCCTGTCGTTAGCAATCAG                         GTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAA
genomic: GAATGGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAA
EST: gi|124887302|gb|EH966204.1|EH966204
EST:     GGAATCCCTGTCGTTAGCAATCAG                         GTGCTAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCT
genomic: GGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGC-AACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCT
EST: gi|86075241|gb|DR370998.1|DR370998
EST:     AGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAGCAATCAG                         GTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT
genomic: AGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAGCAATCAGgtgaatgtca ... ctctttccagGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTT