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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgagaggggctatatctttctcctttgttgtgattgtctatttgtttatctattgggctgctttaagtgtagtattgaaatgctttcagGGAAAATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAGCAATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G27680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124725956|gb|EH817358.1|EH817358
EST:     TGACGGCTATCTTGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAG                         GGAAAATCAAGACTGTTG
genomic: TGACGGCTATCTTGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGgtaagcgaga ... atgctttcagGGAAAATCAAGACTGTTG
EST: gi|124806413|gb|EH893258.1|EH893258
EST:     ACTTGAAGGAAGAAG                         GGAAAATCAAGACTGTTGCTTTTGACTAATTTTGATACAGAGAGACTTCAG
genomic: ACTTGAAGGAAGAAGgtaagcgaga ... atgctttcagGGAAAATCAAGACTGTTGC-TTTGACTAATTTTGATACAGAGAGACTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctatttgtttatctattgggctgctttaagtgtagtattgaaatgctttcagGGAAAATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAGCAATCAG
                                              tgctttc  CT-rich tract
     atttgtttatctatt  TA-rich tract