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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATCAACATACTCGCCGTAAGGCCAGAAGGGGTCATTCTGACAAATGAAGTCACATGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctcactttctgcttaaatacacgttgcagaacgggtcacgaacaaagaatttgaggttactggatagatagataggccaagccagaacttactt...

Basic information

species Arabidopsis thaliana
transcript AT2G24420.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124843374|gb|EH927811.1|EH927811
EST:     AGTCACATGCTTCGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCG
genomic: AGTCACATGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCG
EST: gi|124862525|gb|EH946962.1|EH946962
EST:     TTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
genomic: TTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
EST: gi|125154229|gb|EL184949.1|EL184949
EST:     TGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
genomic: TGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT