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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatattgtgtagaagctattagcgactagtgactgaggttaaaactttggactgatatgtgtctaatgtttcttgatctttatctacattcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATATGTTTCCTTCGTTGCGTATGAAAGAAACAGCTTATGTTAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G24420.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124843374|gb|EH927811.1|EH927811
EST:     AGTCACATGCTTCGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCG
genomic: AGTCACATGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCG
EST: gi|124862525|gb|EH946962.1|EH946962
EST:     TTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
genomic: TTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
EST: gi|125154229|gb|EL184949.1|EL184949
EST:     TGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAG                         GTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT
genomic: TGCTTTGTGTTGTTATCACTTCCTCGTGCTATAAATATTAGAGgtacatctca ... attcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttggactgatatgtgtctaatgtttcttgatctttatctacattcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATATGTTTCCTTCGTTGCGTATGAAAGAAACAGCTTATGTTAGAG
                                            cattctt  CT-rich tract
                     taatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttcatattgtgtagaagctattagcgactagtgactgaggttaaaactttggactgatatgtgtctaatgtttcttgatctttatctacattcttgcagGTAAAGACGGGTTTTGATGCGTTCTCTGTGAGCCTCACCTACAGTCTATATGTTTCCTTCGTTGCGTATGAAAGAAACAGCTTATGTTAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA