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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtttcttataacgaatcattatttataagatttaaattagttttcagtatattgctctgtagttcttaaagatgctccatccttgattccaccaaatgacctttcgtttgtttgttgtatgtttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGAAGGGGTCATTCTGACAAATGAAGTCACATGCTTTGTGTTGTT

Basic information

species Arabidopsis thaliana
transcript AT2G24420.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125228675|gb|EL242760.1|EL242760
EST:     TTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAA
genomic: TTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAA
EST: gi|125313286|gb|EL327371.1|EL327371
EST:     TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGAAGCCTATCCGACAGTCTCAT
genomic: TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCAT
EST: gi|125183283|gb|EL198257.1|EL198257
EST:     TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGA
genomic: TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatccttgattccaccaaatgacctttcgtttgtttgttgtatgtttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAAGGCCAGAAGGGGTCATTCTGACAAATGAAGTCACATGCTTTGTGTTGTT
    ccttgat  putative branch site (score: 5)
                                         tatgtttatt  TA-rich tract