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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCTGCTTTGTTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttcttataacgaatcattatttataagatttaaattagttttcagtatattgctctgtagttcttaaagatgctccatccttgattccaccaaatgacctttcgtttgtttgttgtatgtttattgcag

Basic information

species Arabidopsis thaliana
transcript AT2G24420.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24420.2 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv04s0008g02720.t01 (Vitis vinifera), 5'ss of exon 13
GCCTCTGCTTTGTTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttctta--taacgaatcattatttataagatttaaattagttttcagtatattgctctgtagttcttaaagatgctccatccttgattccaccaaatgacctttcgtttgtttgttgtatgtttattgcag--------------------
||||||||||||||||||||||||||| || |  |||  | | |    |   |  | ||||||  |||| ||||    | || ||  ||   |||          |  || |  | |||        |||   | ||   ||   ||   ||  ||||  | ||     | || |    ||      |    ||   |                     
GCCTCTGCTTTGTTGGCCTTACCCATCATCTTTTTGTTTAGAATTTGTTCAGCCATATTCTGgttagttccttaatctatgattctctagcgatagagaaacctctgtttgtttgcatagaaagtgctagaattgaagagtgtagcagttttatttccttccaaatttttctcatggtctttcctattagaaatcataattttttttttccttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125228675|gb|EL242760.1|EL242760
EST:     TTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAA
genomic: TTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCATCAACATACTCGCCGTAA
EST: gi|125313286|gb|EL327371.1|EL327371
EST:     TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGAAGCCTATCCGACAGTCTCAT
genomic: TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGAAGCCTATCCGACAGTCTCAT
EST: gi|125183283|gb|EL198257.1|EL198257
EST:     TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTG                         CACAAAGACGAAGA
genomic: TTGGCCTTACCCATCTTCATAGTGTACAAATTCCTCTGTTCGCTCTTCTGgcaagtttct ... tttattgcagCACAAAGACGAAGA