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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagcatgacatcattagaaaaacaattgacttaccaaaattgtagtttccttggcgtaacttctctctgttgtcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G20320.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 12
GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagc---atgaca-tcattagaaaaacaattgacttaccaa--aattgtagtttccttggcgtaacttc-----tctctgttgtcttcag--------
|||||  ||||||| || ||  ||||  || | || |||||  | ||||| ||||||||||||||||||||||| |||||    || | | || ||     ||   |    || |     |||| |    |  ||    | |  ||     | || ||| | ||           
GGTGTACTGTCAGCTATTGTTTTGTCAGTTATGCCGATGATAAGACCATTCCAGTGGCAGAGTTTATTGCTTCCTgtaagttctatcatactctttcctgtaagtttcaggtttctgttcaattatgtactttttaatatcatatcggtaatttcagttttgtttgagtggcccc

upper sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA03G32580.1 (Glycine max), 5'ss of exon 12
GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagc--atgacatcattagaaaaacaatt--gacttacc----aaaattgta---gtttccttggcgtaac----ttctctctgttgtcttcag
|||||| | || || | ||| || |||||  | || |||||||| |||||||||||||||||||||||||| ||||| ||   |||   |||  |    |    ||  || || ||       |||||    ||  | | ||  ||||    |  |  || |  | |||||
GGTGTTCTATCTGCCACAGTGCTTTCTCTGATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGgtgagtcaatggattcaacaagccatggtttcagattttccttgtggcattgtcaatgtcacgtaggtctaacaatatgttagctttgcttttcag

upper sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA19G35330.1 (Glycine max), 5'ss of exon 12
GGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCGgtaagc--atgacatcattagaaaaacaattga---cttaccaaaattgtagtttccttggcgtaac----ttctctctgttgtcttcag
|||||| | || || |  || || |||||| | || |||||||| |||||||||||||||||||||||||| || || ||    |||  ||| |     |    || |    || |     |  | ||    | ||  ||||    |  |  |  |  | |||||
GGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCTgtgagtcagtgaattcaatgagccatggtttcagattttcctcgtgtcattgtcatgtaggtctaacaatatgttagccttgtttttcag