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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgatatcagataatatccttttgtagtctagtcttgtctcgactttataatctcatctcaaccacttttcttcttctgccaaagATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACT

Basic information

species Arabidopsis thaliana
transcript AT2G20320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20320.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 3'ss of exon 8
gtatatttgatatcagataatatccttttgtagtctagtcttgtctcgactttataatctcatctcaaccacttttcttcttctgccaaagATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACT
            |  |||   | | |  || | |   || |  |   || |||   |||| || | | | |          | |  ||| |   ||||  | ||| || ||||||||||| ||  | |  || ||||| |||||||| ||||||||||||||  ||||||| ||||||| |
-----------gtatgatgtcagcttactgcatttgtgtgtctttatgaatttc--atcttatgttacctaaaaaataaaattttacaa-gGCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttgtctcgactttataatctcatctcaaccacttttcttcttctgccaaagATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACT
                     tctcatctcaaccact  CT-rich tract
            actttataat  TA-rich tract