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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttaaatatgtcctctgatcgttatttatcttcaattacttgaggagattcaaatggaaatggtcacttgaactgaccggcaactattgcagGGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCG

Basic information

species Arabidopsis thaliana
transcript AT2G20320.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20320.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: LOC_Os03g05200.1 (Oryza sativa), 3'ss of exon 11
----gttagttaaatatgtcctctgatcgttatttatcttcaattacttgaggagattcaaatggaaatggtcacttgaactgaccggcaactattgcagGGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCG
    | | ||||  | ||  || || |   ||| |  | |   || | |     | |||     ||      ||| |    | |  |   |  | ||||||||||  ||||||| || ||  ||||  || | || |||||  | ||||| ||||||||||||||||||||||| 
gtatgcttgttagct-tgagctttg-taactatgtgccct-ggtttcctcttatgcttcctgctgattccagcacctcccttaaatgctta--actgcagGGTGTACTGTCAGCTATTGTTTTGTCAGTTATGCCGATGATAAGACCATTCCAGTGGCAGAGTTTATTGCTTCCT

upper sequence: AT2G20320.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA03G32580.1 (Glycine max), 3'ss of exon 11
--gttagttaaatatgtcctc-tgatcgttatttatcttcaattactt--gaggagattcaaatggaaatggtcacttgaactgaccggcaactattgcagGGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCG
    ||| | | ||  |  |     | | |  ||   ||  |||  |   |||| ||||  ||   || |  ||| ||   |  |     |  || ||||||||||| | || || | ||| || |||||  | || |||||||| |||||||||||||||||||||||||| |||
gttgtagcttattacttagttgctgttgctgattgatttggattgatgcagaggggattataacccaactt-tcattttggcaaattttgacataatgcagGGTGTTCTATCTGCCACAGTGCTTTCTCTGATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCG

upper sequence: AT2G20320.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA19G35330.1 (Glycine max), 3'ss of exon 11
-gttagttaaatatgtc-ctctgatcgttatttatcttcaattact--tgaggagattcaaatggaaatggtcacttgaactgaccggcaactattgcagGGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCG
   ||| | | ||  |   |      |||  |||  ||  |||  |    ||  || | | |     |   ||| ||   |        |   | ||||||||||| | || || |  || || |||||| | || |||||||| |||||||||||||||||||||||||| || 
ttgtagcttagtacttagttgctgctgttgattaatttggattggtgcaaagaggaattataacctgactttcattttggcaatttttgacacaatgcagGGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgaggagattcaaatggaaatggtcacttgaactgaccggcaactattgcagGGTGTTTTGTCAGCAATAGTACTGTCTCTTGTACCAATGATTCGGCCATTTCAGTGGCAGAGTTTATTGCTTCCG
                                 aactgac  putative branch site (score: 2)
          attcaaat  TA-rich tract