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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACTgtacggtctcttcttagcatctttccttttcttttgatggttcagtgtcggttttagatcaacctatataaaatccatctcttatttgtgccttgagttagtgttttcaaagataacaaatatctgaagttgtaaggtattttctttcttccag

Basic information

species Arabidopsis thaliana
transcript AT2G20320.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 5'ss of exon 9
ATAAATGCAAGGTTGGCAGCTGCTGAGGAGGCCATGGGTCTCTCAATGTGGACAACGGCAACAGTTTGTCGTATTCTCTCACTTGAAACTgtacggtctctt--cttagcatctttccttttcttttgatggttcagtgtcggttttagatcaacctatataaaatccatctcttatttgtgccttgagttagtgttttcaaagataacaaatatctgaagttgtaaggtattttctttcttccag
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GCCAATGTCAAGTTAGCTGCTGCTGAGGAAGCTCTTGCACTATCAATATGGACAACAGCAACAGTTTGTCGAGTTCTCTCCCTTGAAAGTgtaatgtttttcactctagcatcataggcttgtcttcaattcagtagtatctgtttct--ttcatctgctctaagtagttctct-attaatg----aagttcttatc-------------------------------------------------