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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgccactttatcttctaattctgttgtttctcctacaatgagtttgattactttttttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA

Basic information

species Arabidopsis thaliana
transcript AT2G16370.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA11G12280.1 (Glycine max), 3'ss of exon 7
-------------gtaatgccactttatcttctaattctgttgtt-tctcctacaatgagtttga-------ttactttttttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
              |   |   || | |     || ||| || || |||| |  |||    ||||       ||| | ||||||||||  ||||||| ||||| ||| | ||||| || |||||||||||||||||||| || || || |||||||| ||||| || ||||| ||||| |||||  | || || |
gtccgcagctatatttgggtttctctttggaagaactctctttttctctcatgaaattttgttgacttccttttattgttttttttttcctgcagTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA06G01280.3 (Glycine max), 3'ss of exon 8
---------gtaatgccactttatcttctaattctgttgtttctcctacaatgagtttgattactttttt--ttttt---ttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
          |||| |   ||| ||||  ||   |      |  |  | | |     |  | |  |||||  |||||   |||||||||||||||| ||| | |||||  | |||||||||||||||||||| || || ||||||||||| ||  | || ||||| ||||| |||||  | ||| | |
gtctgcagcttaattcaggtttttctttgaaaaattgccccttccacatattccacctattgatatttttaatttttaacttttgcagTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGATATGGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G04480.1 (Glycine max), 3'ss of exon 8
-------------gtaatgccactttatcttctaattctgt-tgtttctcctacaatgagt--ttgattacttttt----ttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
              |   |   || | |     |  ||| | | ||||||  |  | |  |  |  | | | ||||    ||||||   || |||| ||||| ||  | ||||| || |||||||||||||||||||| || || || |||||||| ||||| || ||||| ||||| |||||  | || || |
gtccgcagctatatttgggtttctctttggaagagctctctctttttctctcatgaagttttgtcaacttccttttattgttttttccctgtagTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGGGCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA04G01240.1 (Glycine max), 3'ss of exon 8
---------gtaatgccactttatcttctaattctgttgtttctcctacaatgagt-------ttgattacttt--ttttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
          |||| |   ||| ||||  ||     |||   || | ||| | | |       |||||   |||  |||||   |||||||||||||||| ||| | |||||  | |||||||||||||||||||| || || || |||||||| || || || ||||| ||||| |||||  | ||| | |
gtctgcagcttaattcaggtttttctttgaaaa--attgccccttccacacttattccacatattgatatttttaatttttaacttttgcagTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 3'ss of exon 9
-gtaatgccactttatcttctaattctgttgtttctcctacaatgagtttgattacttttttttttttt----ttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
  || |   |   |  ||| |   | | |  ||| || |  | ||  ||||||||| |||||  |||||    |||||||| |||||     | |||||  | ||||| |||||||| ||||| || || || ||||| ||||||||||||||||||||||| |||||  | ||  | |
gttagtattaaagtggcttatttatatttcctttatcattta-tgtctttgattacatttttcctttttcttcttgcagTTCTATGTAAGCCATGGGGAGTTATCATGCCAAATGTACCAGCGATCTGCTGACATGGGTCTTGGTGTGCCGTTTAACATTGCATCTTATGCGCTCTTAA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 3'ss of exon 7
------gtaatgccactttatcttctaattctgttgtttctcctac---aatgagtttgattacttttt---------ttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
         |||| | ||    || | ||| | ||  |  |  |||   | | |  |  | |  || ||         ||| |   |||||||||||||| ||  | ||||| || || ||||||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||  || |  | |
gtttggaacatgctaattctctttatcatttttttcctcattttacggtagtaaaatgcaatgtttcttatttgcgtatttctacattgcagTTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattctgttgtttctcctacaatgagtttgattactttttttttttttttgcagTTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAGCAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTA
                           tttgattacttttttt  CT-rich tract
                     aatgagtttgattact  TA-rich tract