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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttgtaacctgcattatctttttggttaaagaaatattgatcttgacgacctatttgctgatttatccaccgtattttcagTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAA

Basic information

species Arabidopsis thaliana
transcript AT2G16370.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 3'ss of exon 6
gtaat-atttgtaacctgcattatctttttggttaaaga-aatattgatcttgac-----------gacctatttgctgatttatccaccgtattttcagTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAA
||| | || |   | |  || ||           |  || | |  || |||||             || | |||||   |  | |  || || || | ||| | ||| |  || | || || ||||| || || || || || || ||||||||||||||||||||||||||| |
gtatttatcttggatccacactagtcgagaaacaatggatattgctgttcttggttctcgtgctctgatccatttggcaaaat-tttactgtgttct-agTGTTGGCTTAGCACATAGGGAAGAAGGTGATCTAGGTCCAGTTTATGGATTTCAATGGCGACACTTTGGTGCTGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G139880_T01 (Zea mays), 3'ss of exon 5
gtaatatttgtaacctgcattatctttttggttaaagaaatattgatcttgacgacctatttgctgatttatcca-ccgtattttc-agTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAA
    ||||| | |  || || ||    |  || ||  || ||||  |||     |   || | || ||  | |    | | ||||| ||||| ||| || || | || |||||||| || || || || || || ||||||||||||||||||||||||||  |
---gtatttatcagttggat-ataagct--gtaaataaattatt--tctctgttattgatat-ctaatccacctggtcatcttttctagTATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATTTCAATGGCGACACTTTGGTGCCGA

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G01240.1 (Glycine max), 3'ss of exon 6
------gtaatatttgtaacctgcattatctttttggttaaag--aaatattgatcttgacgacctatttgctgatttatccaccgtatttt-----cagTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAA
      | ||   |    |  |   ||| |||||  ||  ||     | |||  |||| | |    | ||  | |||       | | ||||     |||| | ||  |||||||||| ||||| |||||| | |||||||| || || ||||||||| | ||||||||||| | 
tgatgggcaagcatgactatatattttaacttttaagtacaaattgtacatttttctttatgttgcagtttgtaattggctttacatttttttattgcagTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaagaaatattgatcttgacgacctatttgctgatttatccaccgtattttcagTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAA
                             tgctgat  putative branch site (score: 3)
                                              tattttc  putative PPT
     aaatattgat  TA-rich tract