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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcactttttccttaactttccacgtttactcgcaaaaggagaatgctttgtcttctgttgtatttagtggcagttgcatatctacactagctcatattcaaactcacgcaatctgtttgcttttttttggtagCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAATGCAAAA

Basic information

species Arabidopsis thaliana
transcript AT2G16370.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctacactagctcatattcaaactcacgcaatctgtttgcttttttttggtagCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAATGCAAAA
                      aactcac  putative branch site (score: 2)
                                 tctgtttgcttttttt  putative PPT
                                          tttttttt  TA-rich tract