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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAgtcagtaacttttcaatgcatatgttggttttttcttctctgttccgatggatttgttttggtgaaacatctttctcttgttttacag

Basic information

species Arabidopsis thaliana
transcript AT2G16370.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 7
TATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAgtcagtaactttt------caatgcatatgttggttttttcttct--ctgttccgatggatttgttttggtgaaacatctttctcttgttttacag
| | ||| |  || | || || ||||| || || || || || || ||||||||||||||||||||||||||| ||| |||   | |       | |   |  | | | | |     |||  |||| |   | | | | |   |   ||  |        ||||   ||||
TGTTGGCTTAGCACATAGGGAAGAAGGTGATCTAGGTCCAGTTTATGGATTTCAATGGCGACACTTTGGTGCTGAgtaagtttttctctcgcccctacatacctatcgatgtaccaatctatctgtccatctaggtctctaaggactaaggactaactatttgta--acag

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G139880_T01 (Zea mays), 5'ss of exon 6
TATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAgtcag-taacttttcaatgcatatgttggttttttcttctctgttccgatggatttgttttggtgaaacatctttctcttgttttacag
||| ||| || || | || |||||||| || || || || || || ||||||||||||||||||||||||||  ||| || | || || |  | | |  | ||  | ||| |||| |||||      || | || || | ||      ||  | | | | ||||
TATTGGCTTGGCACACAGGGAGGAAGGTGATCTAGGTCCAGTTTATGGATTTCAATGGCGACACTTTGGTGCCGAgtaagcttacattcctttccttgagctgtatcttttttct-tgttc------atgttttctgataaag-----ttgacatatctgacag

upper sequence: AT2G16370.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 7
TATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTTTGGTGCTAAgtcagtaacttttcaatgcatatgttggttttttcttctctgttccgatggatttgttttggtgaaacatcttt-ctcttgttttacag---------------
| | ||  |||||||||| ||||| |||||| | |||||||| || || ||||||||| | ||||||||||| | ||  | ||  | |   |   | | ||  ||||    |   | || | || ||||  |||  ||| ||   ||   |||||  ||    |               
TGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGgtagggaaactatacctttttgttttttttttcctgttggtattacaatagattgttttgtgtggaattgctcaactctttattcgatgccttacattttatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125325349|gb|EL339429.1|EL339429
EST:     TTTCAATGGCGACACTTTGGTGCTAA                         GTACACAGATATGCATGCTGATTATACTGGTCAAGGATTTAGATCAACTTG
genomic: TTTCAATGGCGACACTTTGGTGCTAAgtcagtaact ... tgttttacagGTACACAGATATGCATGCTGATTATACTGGTCAAGGATTT-GATCAACTTG