1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...cttaatgcatcatggctgttcaagagtttctgactcacactatttgactgttgttgtttgcttggctgagctaattttcactttcttccactttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGCTCAACTATTTTGATGAACTGGAGAAT
species | Arabidopsis thaliana |
transcript | AT1G73430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG TTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGEST: gi|116477890|gb|EG520482.1|EG520482
genomic: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTGgtaccgtttc ... ctttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAG
EST: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG TTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGEST: gi|116477895|gb|EG520487.1|EG520487
genomic: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTGgtaccgtttc ... ctttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAG
EST: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG TTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAG-AGTAAGEST: gi|116477891|gb|EG520483.1|EG520483
genomic: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTGgtaccgtttc ... ctttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAG
EST: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTG TTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAG
genomic: AAGGAGTAACAACAAAGACTAAAACTCTTCATGACGCATGTGACCGACTGgtaccgtttc ... ctttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAG
gactgttgttgtttgcttggctgagctaattttcactttcttccactttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGCTCAACTATTTTGATGAACTGGAGAAT
agctaat putative branch site (score: 3)
ctaattttcactttct CT-rich tract
taattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaatgcatcatggctgttcaagagtttctgactcacactatttgactgttgttgtttgcttggctgagctaattttcactttcttccactttttctagTTAATGGAGAAGCAGAAATTGATGGAATTTGCAGAAGCTCTAAGGAGTAAGCTCAACTATTTTGATGAACTGGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - -ctgttca
- - - - - - - - - - - - - - - - -ctcacac