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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCATAGACAATGGCGACTAAGGCGGCTTCGTCTTCCAGCCTCCCCAAATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacacaatctgatgatccaggaagatccattgatcagtctagtgtctggatctgaatgatgctctgtttgttgagaatatactgaattgaaattcccgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G73430.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73430.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 1
GATTTCATAGACAATGGCGACTAAGGCGGCTTCGTCTTCCAGCCTCCCCAAATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacacaatctgatgatccaggaagatccattgatcagtctagtgtctggatctgaatga--tgctctgtttgttgagaat-atactgaattgaaattcccgttgcag
             ||||  |  |  |    | |  ||     ||  || || || |  ||||||||||| || ||||| |||||||| ||||||||||||||   |   |     ||| || |   ||    |  |   || |   |||| |  ||||   |     |||||  ||     || |  ||  ||  |   ||           
-------------ATGGGAAGCAGAGG---TCCACCTCAATCCCATCCAAATTCCGCTGCCATTTCCAAGGGTTACAACTTCGCTTCCACTTGGGAACAGgtttccttcctcaacgattattccccaaatcacgctt-ccatttctgtgtttttatcttctttcctcgctctagttacctcgatttgtatagatctcgtat-----------

upper sequence: AT1G73430.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 2
GATTTCATAGACAATGGCGACTAAGGCGGCTTCGTCTTCCAGCCTCCCCAAATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacacaatctgatgatccaggaagatccattgatcagtctagtgtctggatctgaatgatgctctgtttgttgagaatatactgaattgaaattcccgttgcag
       |     ||||| || ||| | ||||   || | |  ||||| || ||||  || |||||||||||||||||||||||||| ||||||||||||||  ||   |  |||     |         |   ||  | | | |  ||  |   ||| |||     |||  ||| | |   |  |    ||  || ||||||  |   
------GTTCCTCATGGCCACCAAGCCTGCTT---CTGCTACTCTCCCTAAGTCTGCTGCAATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAGgtcctctttctttctc----tttgatttttttttttttttaatttc-tgattacctctcaattgccttct-cttgctcatgctccatattatacaatttcccgagg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477897|gb|EG520489.1|EG520489
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477890|gb|EG520482.1|EG520482
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477895|gb|EG520487.1|EG520487
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477891|gb|EG520483.1|EG520483
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC