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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcacacaatctgatgatccaggaagatccattgatcagtctagtgtctggatctgaatgatgctctgtttgttgagaatatactgaattgaaattcccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCACGCAGTCGCTGAGCGGCCATTTCCTGCCAATCTT

Basic information

species Arabidopsis thaliana
transcript AT1G73430.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477897|gb|EG520489.1|EG520489
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477890|gb|EG520482.1|EG520482
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477895|gb|EG520487.1|EG520487
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
EST: gi|116477891|gb|EG520483.1|EG520483
EST:     AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAG                         AGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC
genomic: AATCTGGAGCCATTTCCAAAGGCTACAATTTCGCTTCGACTTGGGAACAGgtaatcacac ... cccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgaatgatgctctgtttgttgagaatatactgaattgaaattcccgttgcagAGCGCTCCTTTGACAGAGCAGCAACAAGCAGCTATTGTTTCTTTATCCCACGCAGTCGCTGAGCGGCCATTTCCTGCCAATCTT
                                           ttcccgtt  CT-rich tract
                                   aattgaaatt  TA-rich tract