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gttagtgacaatataggagggaatgtgaacttgtaggactctgaaatgaaataagtgagcatgtgaatgattgatttggaatgatatttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGGTGATGGAGAATCTCTTCTACAACAGAAGAATATCTAGGATCTATGATC
species | Arabidopsis thaliana |
transcript | AT1G71010.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAG GTCTCAATTAAACATCCGAAAGGTGGAAAAGAGEST: gi|116444965|gb|EG487557.1|EG487557
genomic: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAGgttagtgaca ... tttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAG
EST: GATTCTCGGTATCTACCAG GTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGEST: gi|116448284|gb|EG490876.1|EG490876
genomic: GATTCTCGGTATCTACCAGgttagtgaca ... tttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATG
EST: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAG GTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGEST: gi|116412488|gb|EG455080.1|EG455080
genomic: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAGgttagtgaca ... tttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATG
EST: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAG GTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATG
genomic: TCAGTTCCGGGAGCCCTACTTGTCTTGCTAAGATTCTCGGTATCTACCAGgttagtgaca ... tttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATG
tgaaatgaaataagtgagcatgtgaatgattgatttggaatgatatttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGGTGATGGAGAATCTCTTCTACAACAGAAGAATATCTAGGATCTATGATC
gattgat putative branch site (score: 4)
aatgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgacaatataggagggaatgtgaacttgtaggactctgaaatgaaataagtgagcatgtgaatgattgatttggaatgatatttgttgtagGTCTCAATTAAACATCCGAAAGGTGGAAAAGAGACAAAGATGGATTTGATGGTGATGGAGAATCTCTTCTACAACAGAAGAATATCTAGGATCTATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA